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License Details of ChemAxon Products

January 9, 2008

• Marvin Applets
• Marvin Beans
• Calculator Plugins: pK_a, logP/logD, charge distribution, surface area, etc.
• JChem Base
• Standardizer
• Screen
• Reactor
• Fragmenter
• JKlustor

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Marvin Applets

API classes:

• MSketch
• MView
• JMSketch
• JMView

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Marvin Beans

Tools:

• MarvinSketch
• MarvinView
• MarvinSpace
• MolConverter
• Calculator (most Calculator Plugins need separate licenses)

API classes:

• chemaxon.formats.*
• chemaxon.struc.* (IUPAC Naming license may be required)
• chemaxon.marvin.* and sub-packages, except for non-free plugins' packages

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Calculator Plugins: pK_a, logP/logD, charge distribution, surface area, etc.

Tool:

• Calculator (most Calculator Plugins need separate licenses)

API classes:

Common classes

chemaxon.marvin.plugin.CalculatorPlugin
chemaxon.marvin.plugin.CalculatorPluginDisplay
chemaxon.marvin.plugin.CalculatorPluginOutput
chemaxon.marvin.plugin.PluginFactory
chemaxon.marvin.plugin.LicenseFieldHandler
chemaxon.marvin.plugin.ParameterPanelHandler
chemaxon.marvin.plugin.gui.OptionsPane
chemaxon.marvin.plugin.gui.ParameterPanel
chemaxon.marvin.plugin.gui.ParameterTab
chemaxon.calculations.ElementalAnalyser
chemaxon.marvin.calculations.MajorMicrospeciesAccessorPlugin
chemaxon.marvin.calculations.ElementalAnalyserPlugin

Protonation bundle

chemaxon.marvin.calculations.pKaPlugin
chemaxon.marvin.calculations.MajorMicrospeciesPlugin
chemaxon.marvin.calculations.IsoelectricPointPlugin

Partitioning bundle

chemaxon.marvin.calculations.logPPlugin
chemaxon.marvin.calculations.logDPlugin

Charge bundle

chemaxon.marvin.calculations.ChargePlugin
chemaxon.marvin.calculations.IonChargePlugin
chemaxon.marvin.calculations.PolarizabilityPlugin
chemaxon.marvin.calculations.OrbitalElectronegativityPlugin

Isomers bundle

chemaxon.marvin.calculations.TautomerizationPlugin
chemaxon.marvin.calculations.ResonancePlugin
chemaxon.marvin.calculations.StereoizomerPlugin

Conformation bundle

chemaxon.marvin.calculations.ConformerPlugin
chemaxon.marvin.calculations.MolecularDynamics

Geometry bundle

chemaxon.calculations.TopologyAnalyser
chemaxon.marvin.calculations.TopologyAnalyserPlugin
chemaxon.marvin.calculations.GeometryPlugin
chemaxon.marvin.calculations.MSAPlugin
chemaxon.marvin.calculations.TPSAPlugin

Huckel Analysis

chemaxon.marvin.calculations.HuckelAnalysisPlugin

Refractivity

chemaxon.marvin.calculations.RefractivityPlugin

Hydrogen Bond Donor-Acceptor

chemaxon.marvin.calculations.HDBAPlugin

IUPAC Naming

chemaxon.marvin.calculations.IUPACNamingPlugin
chemaxon.marvin.modules.nameexport.IUPACNamer

Markush Enumeration

chemaxon.marvin.calculations.EnumerationPlugin

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JChem Base

Tools:

• All tools in Marvin Beans
• Chemical Terms Evaluator
• JChemManager
• Search

API classes:

• All API classes from Marvin Beans
• chemaxon.util.*
• chemaxon.sss.* and sub-packages
• chemaxon.jchem.* and sub-packages
• chemaxon.jep.* and sub-packages
• Marvin Applets package included

Please note that the use of tautomer search option needs Isomers calculator plugin bundle license (includes tautomers).

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Standardizer

Tool:

• Standardizer

API class:

• chemaxon.reaction.Standardizer

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Screen

Tools:

Basic

GenerateMD
ScreenMD

Standard

All tools from Screen Basic
PMapper (additional plugin licenses may be required)

Professional

All tools from Screen Standard
HitStatistics
OptimizeMetrics
ScreeningOptimizer

API classes:

Basic

chemaxon.descriptors.CDParameters
chemaxon.descriptors.CFGenerator
chemaxon.descriptors.CFParameters
chemaxon.descriptors.ChemicalFingerprint
chemaxon.descriptors.CustomDescriptor
chemaxon.descriptors.GenerateMD
chemaxon.descriptors.MDArrayReader
chemaxon.descriptors.MDHypothesisCreator
chemaxon.descriptors.MDHypothesisGenerator
chemaxon.descriptors.MDParameters
chemaxon.descriptors.MDReader
chemaxon.descriptors.MDSet
chemaxon.descriptors.MDSetParameters
chemaxon.descriptors.MDSimilarity
chemaxon.descriptors.MDSimilarityResultWriter
chemaxon.descriptors.MDWriter
chemaxon.descriptors.Metrics
chemaxon.descriptors.MolecularDescriptorGenerator
chemaxon.descriptors.MolecularDescriptor
chemaxon.descriptors.ScalarDescriptor
chemaxon.descriptors.SDParameters
chemaxon.descriptors.scalars.* (additional plugin licenses may be required)

Standard

All API classes from Screen Basic
chemaxon.descriptors.BCUTGenerator (additional plugin licenses may be required)
chemaxon.descriptors.BCUT
chemaxon.descriptors.BCUTParameters
chemaxon.pharmacophore.*

Professional

All API classes from Screen Standard
chemaxon.descriptors.*

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Reactor

Tools:

Standard

Reactor

Professional

All tools from Reactor Standard
Synthesizer
Synthesis Browser

API classes:

Standard

chemaxon.reaction.Reactor
chemaxon.reaction.Reaction

Professional

All API classes from Reactor Standard
chemaxon.reaction.Synthesizer
chemaxon.reaction.SynthesisGraph
chemaxon.reaction.SynthesisAlgorithm
chemaxon.reaction.synthesis.LinearAlgorithm
chemaxon.reaction.synthesis.RandomAlgorithm
chemaxon.reaction.synthesis.ExhaustiveAlgorithm
chemaxon.jep.MolCondition

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Fragmenter

Tools:

• Fragmenter
• FragmentStatistics
• RGroupDecomposition

API classes:

• chemaxon.reaction.Fragmenter
• chemaxon.reaction.ExhaustiveFragmenter
• chemaxon.reaction.CutBondReviser
• chemaxon.reaction.Recap
• chemaxon.sss.search.RGroupDecomposition

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JKlustor

Tools:

Basic, Standard

Compr
CreateView
GenerateMD
Jarp
NNeib
Ward
LibraryMCS

API classes:

Basic

chemaxon.clustering.*
chemaxon.descriptors.CFGenerator
chemaxon.descriptors.CFParameters
chemaxon.descriptors.ChemicalFingerprint
chemaxon.descriptors.GenerateMD
chemaxon.descriptors.MDFileReader
chemaxon.descriptors.MDFileWriter
chemaxon.descriptors.MDParameters
chemaxon.descriptors.MDReader
chemaxon.descriptors.MDWriter
chemaxon.descriptors.MolecularDescriptor

Standard:

All API classes from JKlustor Basic:
chemaxon.pharmacophore.*
chemaxon.clustering.LibraryMCS