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evaluator index out of bound (max elements 1000)
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Reply to topic    Home -> Forums -> Support -> Library profiling: Structure based prediction & Chemical Terms -> evaluator index out of bound (max elements 1000)

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TobiasKind
Joined: 26 Jan 2005
Posts: 424


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Post subject: evaluator index out of bound (max elements 1000)
Link to postPosted: Tue Jul 22, 2008 3:43 am  Reply with quote
Hi,
I use a evaluator schema with more than 1000 elements and get the following errror: The reason is I don't want to use the API code because the
evaluator is quite comfortable. However I know how to use the API (with simple code).

Just an example from SMARTS

array(
matchCount("[OH1]
  • "),
    .. 10k elements
    matchcount("C(
  • )(
  • )(
  • )
  • "))

    use as evaluate -e test.xml "CCC"

    JCHEM Version is 4.1.13
    Cheers
    Tobias


    1000
    at chemaxon.nfunk.jep.JEP.getValueAsObject(JEP.java:477)
    at chemaxon.jep.ChemJEP.evaluate(ChemJEP.java:150)
    at chemaxon.jep.Evaluator.main(Evaluator.java:868)
    Error 1:
    java.lang.ArrayIndexOutOfBoundsException: 1000
    at chemaxon.nfunk.jep.util.OptStack.push(OptStack.java:29)
    at chemaxon.nfunk.jep.EvaluatorVisitor.visit(EvaluatorVisitor.java:423)
    at chemaxon.nfunk.jep.ASTConstant.jjtAccept(ASTConstant.java:42)
    at chemaxon.nfunk.jep.SimpleNode.childrenAccept(SimpleNode.java:70)
    at chemaxon.nfunk.jep.EvaluatorVisitor.visit(EvaluatorVisitor.java:268)
    at chemaxon.nfunk.jep.ASTFunNode.jjtAccept(ASTFunNode.java:60)
    at chemaxon.nfunk.jep.SimpleNode.childrenAccept(SimpleNode.java:70)
    at chemaxon.nfunk.jep.EvaluatorVisitor.visit(EvaluatorVisitor.java:268)
    at chemaxon.nfunk.jep.ASTFunNode.jjtAccept(ASTFunNode.java:60)
    at chemaxon.nfunk.jep.EvaluatorVisitor.getValue(EvaluatorVisitor.java:156)
    at chemaxon.nfunk.jep.JEP.getValueAsObject(JEP.java:470)
    at chemaxon.jep.ChemJEP.evaluate(ChemJEP.java:150)
    at chemaxon.jep.Evaluator.main(Evaluator.java:868)
    Error 2:
    ERRORS:
    Error 1:
    1000
    ------------------------------
    TRACES:
    chemaxon.nfunk.jep.ParseException:
    1000
    at chemaxon.nfunk.jep.EvaluatorVisitor.getValue(EvaluatorVisitor.java:160)
    at chemaxon.nfunk.jep.JEP.getValueAsObject(JEP.java:470)
    at chemaxon.jep.ChemJEP.evaluate(ChemJEP.java:150)
    at chemaxon.jep.Evaluator.main(Evaluator.java:868)
    Error 1:
    java.lang.ArrayIndexOutOfBoundsException: 1000
    at chemaxon.nfunk.jep.util.OptStack.push(OptStack.java:29)
    at chemaxon.nfunk.jep.EvaluatorVisitor.visit(EvaluatorVisitor.java:423)
    at chemaxon.nfunk.jep.ASTConstant.jjtAccept(ASTConstant.java:42)
    at chemaxon.nfunk.jep.SimpleNode.childrenAccept(SimpleNode.java:70)
    at chemaxon.nfunk.jep.EvaluatorVisitor.visit(EvaluatorVisitor.java:268)
    at chemaxon.nfunk.jep.ASTFunNode.jjtAccept(ASTFunNode.java:60)
    at chemaxon.nfunk.jep.SimpleNode.childrenAccept(SimpleNode.java:70)
    at chemaxon.nfunk.jep.EvaluatorVisitor.visit(EvaluatorVisitor.java:268)
    at chemaxon.nfunk.jep.ASTFunNode.jjtAccept(ASTFunNode.java:60)
    at chemaxon.nfunk.jep.EvaluatorVisitor.getValue(EvaluatorVisitor.java:156)
    at chemaxon.nfunk.jep.JEP.getValueAsObject(JEP.java:470)
    at chemaxon.jep.ChemJEP.evaluate(ChemJEP.java:150)
    at chemaxon.jep.Evaluator.main(Evaluator.java:868)
    		•
    Zsolt
    Joined: 11 Jan 2006
    Posts: 446
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    Post subject:
    Link to postPosted: Tue Jul 22, 2008 9:56 am  Reply with quote
    Hi,

    The exception is thrown because there is a size limitation in chemaxon.nfunk.jep.util.OptStack. It already has been fixed in JChem 5.1 (will be released soon), and we will fix it in JChem 5.0.7 too.

    Regards,
    Zsolt
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