com.im.df.query
Class JChemSearchCapability.SimilaritySearch

java.lang.Object
  com.im.df.query.JChemSearchCapability
      com.im.df.query.JChemSearchCapability.SimilaritySearch

All Implemented Interfaces:

SearchCapability.SearchMode

Enclosing class:

JChemSearchCapability

public static class JChemSearchCapability.SimilaritySearch
extends JChemSearchCapability
implements SearchCapability.SearchMode

Nested Class Summary

Nested classes/interfaces inherited from class com.im.df.query.JChemSearchCapability

JChemSearchCapability.AbstractStandardSearch, JChemSearchCapability.DuplicateSearch, JChemSearchCapability.FullFragmentSearch, JChemSearchCapability.FullSearch, JChemSearchCapability.SimilaritySearch, JChemSearchCapability.SubstructureSearch, JChemSearchCapability.SuperstructureSearch

Field Summary

Fields inherited from class com.im.df.query.JChemSearchCapability

description, name, opts, paramsPanel, searchType, target

Constructor Summary

JChemSearchCapability.SimilaritySearch(com.im.df.impl.db.entity.DBEntityAbstractJChemImpl target)

Method Summary

void	createParamsPanel()
void	executeOverlapAnalysis(DFEntity query, DFEntity target, String prefix, boolean outputToCosole, DFField outputField, DFEnvironmentRO env, DFLock etyLock, DFLock edpLock)
float	getSimilarityThreshold() Getter for property similarityThreshold.
DFField[]	prepareFields(String prefix, DFEntity ety, DFEnvironmentRW env)
void	processSearch(int count, Object id, com.im.df.impl.db.entity.SearchHandler searcher, boolean isCompareToSelf, int max, DFField[] fields, DFEntityDataProvider queryEDP, DFEntityDataProvider targetEDP, boolean outputToConsole, DFField outputField, DFEnvironmentRW env)
void	setSimilarityThreshold(float similarityThreshold) Setter for property similarityThreshold.
boolean	supportsTableType(int tableType) Is this search type supported for the specified table type

Methods inherited from class com.im.df.query.JChemSearchCapability

execute, generateIDsToOutput, getDescription, getName, getParametersPanel, getSearchOptions, getSearchType, logResult, prepareFieldsStandard, processStandardSearch

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.im.df.query.SearchCapability.SearchMode

getDescription, getName, getParametersPanel, getSearchOptions, getSearchType

Constructor Detail

JChemSearchCapability.SimilaritySearch

public JChemSearchCapability.SimilaritySearch(com.im.df.impl.db.entity.DBEntityAbstractJChemImpl target)

Method Detail

executeOverlapAnalysis

public void executeOverlapAnalysis(DFEntity query,
                                   DFEntity target,
                                   String prefix,
                                   boolean outputToCosole,
                                   DFField outputField,
                                   DFEnvironmentRO env,
                                   DFLock etyLock,
                                   DFLock edpLock)

Specified by:

executeOverlapAnalysis in interface SearchCapability.SearchMode

createParamsPanel

public void createParamsPanel()

Specified by:

createParamsPanel in class JChemSearchCapability

prepareFields

public DFField[] prepareFields(String prefix,
                               DFEntity ety,
                               DFEnvironmentRW env)

Specified by:

prepareFields in class JChemSearchCapability

processSearch

public void processSearch(int count,
                          Object id,
                          com.im.df.impl.db.entity.SearchHandler searcher,
                          boolean isCompareToSelf,
                          int max,
                          DFField[] fields,
                          DFEntityDataProvider queryEDP,
                          DFEntityDataProvider targetEDP,
                          boolean outputToConsole,
                          DFField outputField,
                          DFEnvironmentRW env)

Specified by:

processSearch in class JChemSearchCapability

getSimilarityThreshold

public float getSimilarityThreshold()

Getter for property similarityThreshold.

Returns:

Value of property similarityThreshold.

setSimilarityThreshold

public void setSimilarityThreshold(float similarityThreshold)

Setter for property similarityThreshold.

Parameters:

similarityThreshold - New value of property similarityThreshold.

supportsTableType

public boolean supportsTableType(int tableType)

Description copied from interface: SearchCapability.SearchMode

Is this search type supported for the specified table type

Specified by:

supportsTableType in interface SearchCapability.SearchMode

Parameters:

tableType - One of the chemaxon.jchem.db.TableTypeConstants.TABLE_TYPE_* constants

Returns:

True if the search type supported