com.im.df.query
Class JChemSearchCapability

java.lang.Object
  com.im.df.query.JChemSearchCapability

Direct Known Subclasses:

JChemSearchCapability.AbstractStandardSearch, JChemSearchCapability.SimilaritySearch

public abstract class JChemSearchCapability
extends Object

Nested Class Summary

static class	JChemSearchCapability.AbstractStandardSearch
static class	JChemSearchCapability.DuplicateSearch
static class	JChemSearchCapability.FullFragmentSearch
static class	JChemSearchCapability.FullSearch
static class	JChemSearchCapability.SimilaritySearch
static class	JChemSearchCapability.SubstructureSearch
static class	JChemSearchCapability.SuperstructureSearch

Field Summary

protected String	description
protected String	name
protected JChemSearchOptions	opts
protected JChemSearchParametersPanel	paramsPanel
protected int	searchType
protected com.im.df.impl.db.entity.DBEntityAbstractJChemImpl	target

Constructor Summary

JChemSearchCapability()

Method Summary

abstract void	createParamsPanel()
void	execute(DFEntity query, String prefix, boolean outputToConsole, DFField outputField, DFEnvironmentRO env, DFLock etyLock, DFLock edpLock)
protected String[]	generateIDsToOutput(int[] hits, DFField outputField, DFEntityDataProvider targetEDP, DFEnvironmentRW env)
String	getDescription()
String	getName()
JChemSearchParametersPanel	getParametersPanel()
JChemSearchOptions	getSearchOptions()
int	getSearchType()
protected void	logResult(Object id, List<String> ids, DFFeedback fb)
abstract DFField[]	prepareFields(String prefix, DFEntity ety, DFEnvironmentRW env)
DFField[]	prepareFieldsStandard(String prefix, DFEntity ety, DFEnvironmentRW env)
abstract void	processSearch(int count, Object id, com.im.df.impl.db.entity.SearchHandler searcher, boolean isCompareToSelf, int max, DFField[] fields, DFEntityDataProvider queryEDP, DFEntityDataProvider targetEDP, boolean outputToConsole, DFField outputField, DFEnvironmentRW env)
void	processStandardSearch(int count, Object id, com.im.df.impl.db.entity.SearchHandler searcher, boolean isCompareToSelf, int max, DFField[] fields, DFEntityDataProvider queryEDP, DFEntityDataProvider targetEDP, boolean outputToConsole, DFField outputField, DFEnvironmentRW env)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

target

protected com.im.df.impl.db.entity.DBEntityAbstractJChemImpl target

name

protected String name

description

protected String description

paramsPanel

protected JChemSearchParametersPanel paramsPanel

searchType

protected int searchType

opts

protected JChemSearchOptions opts

Constructor Detail

JChemSearchCapability

public JChemSearchCapability()

Method Detail

getDescription

public String getDescription()

getSearchType

public int getSearchType()

getName

public String getName()

getSearchOptions

public JChemSearchOptions getSearchOptions()

logResult

protected void logResult(Object id,
                         List<String> ids,
                         DFFeedback fb)

execute

public void execute(DFEntity query,
                    String prefix,
                    boolean outputToConsole,
                    DFField outputField,
                    DFEnvironmentRO env,
                    DFLock etyLock,
                    DFLock edpLock)

getParametersPanel

public JChemSearchParametersPanel getParametersPanel()

createParamsPanel

public abstract void createParamsPanel()

prepareFields

public abstract DFField[] prepareFields(String prefix,
                                        DFEntity ety,
                                        DFEnvironmentRW env)

processSearch

public abstract void processSearch(int count,
                                   Object id,
                                   com.im.df.impl.db.entity.SearchHandler searcher,
                                   boolean isCompareToSelf,
                                   int max,
                                   DFField[] fields,
                                   DFEntityDataProvider queryEDP,
                                   DFEntityDataProvider targetEDP,
                                   boolean outputToConsole,
                                   DFField outputField,
                                   DFEnvironmentRW env)

processStandardSearch

public void processStandardSearch(int count,
                                  Object id,
                                  com.im.df.impl.db.entity.SearchHandler searcher,
                                  boolean isCompareToSelf,
                                  int max,
                                  DFField[] fields,
                                  DFEntityDataProvider queryEDP,
                                  DFEntityDataProvider targetEDP,
                                  boolean outputToConsole,
                                  DFField outputField,
                                  DFEnvironmentRW env)

generateIDsToOutput

protected String[] generateIDsToOutput(int[] hits,
                                       DFField outputField,
                                       DFEntityDataProvider targetEDP,
                                       DFEnvironmentRW env)

prepareFieldsStandard

public DFField[] prepareFieldsStandard(String prefix,
                                       DFEntity ety,
                                       DFEnvironmentRW env)