A B C D E F G H I J L M N O P Q R S T U V W X

A

actionPerformed(ActionEvent) - Method in class com.im.df.query.ui.ChemicalTermsEditor.ComponentListener

addCapability(DFCapability) - Method in interface com.im.df.spi.ddl.DFSchemaAccess

Factories can access addCapability to enhance the Schema with additional capabilities e.g.

addChangeListener(ChangeListener) - Method in class com.im.df.query.ui.AdvancedQueryUIBuilder

addChangeListener(ChangeListener) - Method in class com.im.df.query.ui.ChemicalTermsEditor

addFavourite(CTFavourite) - Method in interface com.im.df.util.CTFavouritesProvider

Add a new favourite CT expression

addFileExtensionIfNeeded(String, String, String[]) - Static method in class com.im.df.util.DFUtils

Add the file extension to the file name if it does not already have an acceptable extension

addMessage(DFFeedback.Type, Object, Throwable) - Method in class com.im.df.util.DFEnvFeedbackAdapter

addMessage(DFFeedback.Type, String, Throwable) - Method in class com.im.df.util.DFEnvFeedbackAdapter

addNotify() - Method in class com.im.df.core.ui.ChemicalTermsFieldPanel

addNotify() - Method in class com.im.df.query.ui.SimilaritySearchParamsPanel

addPropertyChangeListener(PropertyChangeListener) - Method in class com.im.df.util.DFEnvFeedbackAdapter

addValidationListener(JTextField) - Method in class com.im.df.query.ui.ChemicalTermsEditor

AdvancedQueryUIBuilder - Class in com.im.df.query.ui

TODO P2 - this class and whole search should be moved out of DIF module.

AdvancedQueryUIBuilder(DFDataTree) - Constructor for class com.im.df.query.ui.AdvancedQueryUIBuilder

Creates a new instance of AdvancedQueryUIBuilder for a DataTree.

applyChangeToModel(T, DFEnvironmentRW) - Method in interface com.im.df.impl.db.api.DFNewTypeChangeProcessor

Apply the change to the DIF model.

B

buildEmpty(DFField, Class[], boolean) - Method in interface com.im.df.core.ui.FieldUIBuilder

buildEmpty(DFField, Class[], boolean) - Method in class com.im.df.core.ui.StandardFieldUIBuilder

buildField(DFField, Object, boolean) - Method in interface com.im.df.core.ui.FieldUIBuilder

buildField(DFField, Object, Class[], boolean) - Method in interface com.im.df.core.ui.FieldUIBuilder

buildField(DFField, Object, Class[], boolean) - Method in class com.im.df.core.ui.StandardFieldUIBuilder

buildField(DFField, Object, boolean) - Method in class com.im.df.core.ui.StandardFieldUIBuilder

buildHeading(String, String) - Method in interface com.im.df.core.ui.FieldUIBuilder

buildHeading(String[]) - Method in interface com.im.df.core.ui.FieldUIBuilder

buildHeading(String, String) - Method in class com.im.df.core.ui.StandardFieldUIBuilder

buildHeading(String[]) - Method in class com.im.df.core.ui.StandardFieldUIBuilder

Use if extra columns are being used.

buildOptionsPanel(DFOperator) - Method in class com.im.df.query.ui.StructureQueryPanel

Creates a search options panel with settings that are a clone of the current ones

buildQuery() - Method in class com.im.df.query.ui.AdvancedQueryUIBuilder

buildQueryTerm(DFField) - Method in class com.im.df.query.ui.StructureQueryPanel

buildQueryTerm() - Method in class com.im.df.query.ui.StructureQueryWidget

C

CachingMap<K,V> - Class in com.im.df.util

The map that acts as LRU cache.

CachingMap(int) - Constructor for class com.im.df.util.CachingMap

CASE_INSENSITIVE_SEARCH - Static variable in class com.im.df.query.ui.QueryFactories

CaseInsensitiveProperty - Class in com.im.df.core.ui

CaseInsensitiveProperty() - Constructor for class com.im.df.core.ui.CaseInsensitiveProperty

CEValidatorRunner - Class in com.im.df.util

Validator for chemical terms expressions.

CEValidatorRunner() - Constructor for class com.im.df.util.CEValidatorRunner

CharactersetPropertyEditor - Class in com.im.df.core.ui

CharactersetPropertyEditor() - Constructor for class com.im.df.core.ui.CharactersetPropertyEditor

Creates a new instance of CharactersetPropertyEditor

CharactersetPropertyEditor(Object) - Constructor for class com.im.df.core.ui.CharactersetPropertyEditor

CharsetChooser - Class in com.im.df.core.ui

CharsetChooser() - Constructor for class com.im.df.core.ui.CharsetChooser

Creates a new instance of CharsetChooser

checkApplyCall() - Method in class com.im.df.util.DFCustomizerSupport

ChemicalTermsEditor - Class in com.im.df.query.ui

JTextField based editor for a CT expression that uses a popup window with the main CT editor

ChemicalTermsEditor() - Constructor for class com.im.df.query.ui.ChemicalTermsEditor

Creates a new instance of ChemicalTermsEditor

ChemicalTermsEditor.ComponentListener - Class in com.im.df.query.ui

ChemicalTermsEditor.ComponentListener() - Constructor for class com.im.df.query.ui.ChemicalTermsEditor.ComponentListener

ChemicalTermsExpressionUtils - Class in com.im.df.util

Validates chemical terms expressions.

ChemicalTermsExpressionUtils() - Constructor for class com.im.df.util.ChemicalTermsExpressionUtils

Creates a new instance of ChemicalTermsExpressionUtils

ChemicalTermsFieldPanel - Class in com.im.df.core.ui

Component for editing chemical terms expression.

ChemicalTermsFieldPanel() - Constructor for class com.im.df.core.ui.ChemicalTermsFieldPanel

Creates new form ChemicalTermsFieldPanel

clear() - Method in class com.im.df.query.ui.AdvancedQueryUIBuilder

Clear the query values

clearReferences() - Static method in class com.im.df.query.ui.AdvancedQueryUIBuilder

clearUI() - Method in class com.im.df.query.ui.StructureQueryPanel

clearUI() - Method in class com.im.df.query.ui.StructureQueryWidget

clearValue(Integer) - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated. Clears the specified value.

close() - Method in interface com.im.df.core.MoleculeIterator

close and release any resources

com.im.df.core - package com.im.df.core

API Status: 4 - Obsoleted This package contains old IJC 1.0 core implementation classes.

com.im.df.core.ui - package com.im.df.core.ui

API Status: 4 - Obsoleted This package contains old IJC 1.0 core UI classes.

com.im.df.impl.db.api - package com.im.df.impl.db.api

API Status: 2 - Pretty stable This is a default relational database oriented DIF implementation.

com.im.df.query - package com.im.df.query

API Status: 3 - Under development This package contains classes related to search.

com.im.df.query.ui - package com.im.df.query.ui

API Status: 4 - Obsoleted UI components for building query user interfaces based on a set of DFFields.

com.im.df.spi.ddl - package com.im.df.spi.ddl

API Status: 3 - Under development The early version of DIF SPI (Service Provider Interface).

com.im.df.util - package com.im.df.util

API Status: 2 - Pretty stable Contains utilities which are not so related to DIF API, and so are located in this package.

com.im.df.util.ui - package com.im.df.util.ui

API Status: 2 - Pretty stable Contains user interface utilities.

componentResized(ComponentEvent) - Method in class com.im.df.query.ui.AdvancedQueryUIBuilder

computeDiff(List<? extends T>, List<? extends T>) - Static method in class com.im.df.util.DFUtils

configure(SearchCapability.SearchMode) - Method in interface com.im.df.query.JChemSearchConfigurator

TODO: javadoc missing

configure(SearchCapability.SearchMode) - Method in class com.im.df.query.ui.ExactSearchParamsPanel

configure(SearchCapability.SearchMode) - Method in class com.im.df.query.ui.PerfectSearchParamsPanel

configure(SearchCapability.SearchMode) - Method in class com.im.df.query.ui.SimilaritySearchParamsPanel

containsExpressionValue(String, Map<String, String>) - Static method in class com.im.df.util.ChemicalTermsExpressionUtils

create(DFField, String) - Method in class com.im.df.core.ui.CaseInsensitiveProperty

create(DFField, String) - Method in class com.im.df.core.ui.FieldMimeTypeProperty

create(DFField, String) - Method in class com.im.df.core.ui.FileFormatFieldProperty

create(DFEntity, String) - Method in class com.im.df.core.ui.FilterQueryAllowedProperty

create(DFOperator, JChemEntityCapability) - Static method in class com.im.df.query.ui.JChemSearchParametersPanel

Factory method for creating the appropriate type of options panel.

createCompositeQueryTerm(DFOperator, List<DFTermExpression>) - Method in class com.im.df.query.ui.QueryFactories

Create a default AND or OR query term for this field.

createCompositeQueryTerm(DFOperator, List<DFTermExpression>, Map<String, Object>) - Method in class com.im.df.query.ui.QueryFactories

Create composite term.

createCTTextPane() - Static method in class com.im.df.util.ChemicalTermsExpressionUtils

createDefaultReadOnlyPropsProvider(File) - Static method in class com.im.df.impl.db.api.DBImplSchemaProvider

Creates a new default instance of PropsProvider, which provides properties of the schema.

createDefaultValidatorForLists(DFContainer<DFList>, DFField) - Static method in class com.im.df.util.DBNameUtils

createFieldOperatorValueQueryTerm(DFField, boolean) - Method in class com.im.df.query.ui.QueryFactories

Create a default field operator value query term for this field TODO - we need to be able to specify the operator, but we need a mechanism to work out which should be the default.

createFieldOperatorValueQueryTerm(DFField, DFOperator, Object...) - Method in class com.im.df.query.ui.QueryFactories

createJChemSearchOptions() - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

createNewInstance() - Method in class com.im.df.util.GenericInstancesProvider

createParamsPanel() - Method in class com.im.df.query.JChemSearchCapability

createParamsPanel() - Method in class com.im.df.query.JChemSearchCapability.DuplicateSearch

createParamsPanel() - Method in class com.im.df.query.JChemSearchCapability.FullFragmentSearch

createParamsPanel() - Method in class com.im.df.query.JChemSearchCapability.FullSearch

createParamsPanel() - Method in class com.im.df.query.JChemSearchCapability.SimilaritySearch

createParamsPanel() - Method in class com.im.df.query.JChemSearchCapability.SubstructureSearch

createParamsPanel() - Method in class com.im.df.query.JChemSearchCapability.SuperstructureSearch

createPatternFor(String[], boolean) - Static method in class com.im.df.util.DBNameUtils

createQueryTerm(DFOperator, List<DFTermExpression>, Map<String, Object>) - Method in class com.im.df.query.ui.QueryFactories.CompositeQueryTermFactory

createQueryTerm(DFField, boolean) - Method in class com.im.df.query.ui.QueryFactories.FieldOperatorValueQueryTermFactory

createQueryTerm(DFField, DFOperator, Object...) - Method in class com.im.df.query.ui.QueryFactories.FieldOperatorValueQueryTermFactory

createQueryTerm(DFField, boolean) - Method in class com.im.df.query.ui.QueryFactories.StructureQueryTermFactory

createQueryTerm(DFField, DFOperator, Object...) - Method in class com.im.df.query.ui.QueryFactories.StructureQueryTermFactory

createSchema(CreateSchemaInfo, DFEnvironmentRO) - Static method in class com.im.df.impl.db.api.DBImplBackdoor

Creates a new schema, using information / connection present in the CreateSchemaInfo.

CreateSchemaInfo - Class in com.im.df.impl.db.api

Creation info for the Schema creation operation.

CreateSchemaInfo() - Constructor for class com.im.df.impl.db.api.CreateSchemaInfo

createSchemaProvider(DBImplSchemaProvider.PropsProvider) - Static method in class com.im.df.impl.db.api.DBImplSchemaProvider

Creates the schema provider based on properties given by propsProvider.

createTask() - Method in class com.im.df.util.UIBackgroundRunnerRW

createWhereClause(DFTermExpression, DFSQLElementFactory, String) - Method in class com.im.df.query.ui.QueryFactories.CompositeQueryTermFactory

createWhereClause(DFTermExpression, DFSQLElementFactory, String) - Method in class com.im.df.query.ui.QueryFactories.FieldOperatorValueQueryTermFactory

createWhereClause(DFTermExpression, DFSQLElementFactory, String) - Method in class com.im.df.query.ui.QueryFactories.QueryTermFactory

Create an appropriate where clause for our type of query

createWhereClause(DFTermExpression, DFSQLElementFactory, String) - Method in class com.im.df.query.ui.QueryFactories.StructureQueryTermFactory

createWhereClauseElement(DFTermExpression) - Method in class com.im.df.query.ui.QueryFactories

CREATION_MODE - Static variable in class com.im.df.query.ui.AdvancedQueryUIBuilder

CT_FAVOURITE_NAME - Static variable in class com.im.df.util.ui.DFComparators

CT_FAVOURITE_POPULARITY - Static variable in class com.im.df.util.ui.DFComparators

CT_FAVOURITE_TYPE - Static variable in class com.im.df.util.ui.DFComparators

CTFavourite - Class in com.im.df.util

Chemical terms favourite

CTFavourite(Class<? extends DFFieldDataTypeCapability>, String, String) - Constructor for class com.im.df.util.CTFavourite

CTFavourite(Class<? extends DFFieldDataTypeCapability>, String, String, int) - Constructor for class com.im.df.util.CTFavourite

CTFavouritesProvider - Interface in com.im.df.util

Manager of Chemical terms favourites in the system.

CTFavouritesUtils - Class in com.im.df.util

Various chemical terms favourites utils.

CTFavouritesUtils() - Constructor for class com.im.df.util.CTFavouritesUtils

CTFieldUIUtils - Class in com.im.df.util.ui

CTFieldUIUtils() - Constructor for class com.im.df.util.ui.CTFieldUIUtils

CTFieldUIUtils.FavouritesCellRenderer - Class in com.im.df.util.ui

CTFieldUIUtils.FavouritesCellRenderer() - Constructor for class com.im.df.util.ui.CTFieldUIUtils.FavouritesCellRenderer

CTFieldUIUtils.TypesCellRenderer - Class in com.im.df.util.ui

CTFieldUIUtils.TypesCellRenderer() - Constructor for class com.im.df.util.ui.CTFieldUIUtils.TypesCellRenderer

CTValidatorRunner - Class in com.im.df.util

Validator for chemical terms expressions.

CTValidatorRunner() - Constructor for class com.im.df.util.CTValidatorRunner

currentId() - Method in interface com.im.df.core.MoleculeIterator

the ID of the current Molecule

CUSTOM_OBJECT_POOL_FACTORY - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

CustomFocusTraversalPolicy - Class in com.im.df.core.ui

Class that allows a custom focus traversal policy to be defined.

CustomFocusTraversalPolicy(Vector<Component>) - Constructor for class com.im.df.core.ui.CustomFocusTraversalPolicy

D

DATA_TREE_PATH - Static variable in class com.im.df.query.ui.QueryFactories

The path down the dta tree in terms of the DFRelationship.Directions

DATA_TREE_STANDARD - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of datatree type constant (see DFItem.getType()).

DATABASE_CATALOG - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

DATABASE_DRIVER - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

DATABASE_IS_LOCAL - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

DATABASE_PASSWORD - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

DATABASE_SCHEMA - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

DATABASE_URL - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

DATABASE_USERNAME - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

DB_SCHEMA_PLUS_TABLE - Static variable in class com.im.df.util.ui.DFComparators

DB_TABLE - Static variable in class com.im.df.util.ui.DFComparators

DBImplBackdoor - Class in com.im.df.impl.db.api

This class is a factory for creating DB impl items.

DBImplConstants - Class in com.im.df.impl.db.api

The default DIF implementation constants.

DBImplConstants() - Constructor for class com.im.df.impl.db.api.DBImplConstants

DBImplQueryConstants - Class in com.im.df.impl.db.api

DBImplQueryConstants() - Constructor for class com.im.df.impl.db.api.DBImplQueryConstants

DBImplSchemaProvider - Class in com.im.df.impl.db.api

This class is used as starting point to DIF database implementation of DFSchemaProvider.

DBImplSchemaProvider() - Constructor for class com.im.df.impl.db.api.DBImplSchemaProvider

DBImplSchemaProvider.PropsProvider - Interface in com.im.df.impl.db.api

Callback for reading/writing schema init properties.

DBImplSchemaProvider.PropsProviderExtra - Interface in com.im.df.impl.db.api

Extra implementation can provide also a capability to be added to DFSchema when it's created.

DBImplSchemaProvider.ShowOpts - Enum in com.im.df.impl.db.api

DBNameUtils - Class in com.im.df.util

Utilities for names used in Databases - column, table names, etc.

DBNameUtils() - Constructor for class com.im.df.util.DBNameUtils

DBNameUtils.DefaultValidator - Class in com.im.df.util

Default validator for the basic validation of DB a DFItem names

DBNameUtils.DefaultValidator(DBNameUtils.VType) - Constructor for class com.im.df.util.DBNameUtils.DefaultValidator

Creates default validator

DBNameUtils.DefaultValidator(DBNameUtils.VType, int) - Constructor for class com.im.df.util.DBNameUtils.DefaultValidator

Creates default validator

DBNameUtils.DefaultValidator(DBNameUtils.VType, DFContainer) - Constructor for class com.im.df.util.DBNameUtils.DefaultValidator

Creates default validator

DBNameUtils.DefaultValidator(DBNameUtils.VType, DFContainer, String) - Constructor for class com.im.df.util.DBNameUtils.DefaultValidator

Creates default validator

DBNameUtils.DefaultValidator(DBNameUtils.VType, String[]) - Constructor for class com.im.df.util.DBNameUtils.DefaultValidator

Creates default validator

DBNameUtils.DefaultValidator(DBNameUtils.VType, String[], boolean) - Constructor for class com.im.df.util.DBNameUtils.DefaultValidator

Creates default validator

DBNameUtils.DefaultValidator(DBNameUtils.VType, String[], int) - Constructor for class com.im.df.util.DBNameUtils.DefaultValidator

Creates default validator

DBNameUtils.DefaultValidator(DBNameUtils.VType, String[], boolean, int) - Constructor for class com.im.df.util.DBNameUtils.DefaultValidator

Creates default validator

DBNameUtils.Validator - Interface in com.im.df.util

Should be used for validation the DB names (columns, tables, etc.)

DBNameUtils.VType - Enum in com.im.df.util

Types of default validator.

decryptUserAndPass(Properties, Set<String>) - Static method in class com.im.df.impl.db.api.DBImplSchemaProvider

defaultWidgetFactoryType - Variable in class com.im.df.query.ui.QueryFactories.QueryTermFactory

defineAtomOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.ExactSearchParamsPanel

defineHomologyOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.ExactSearchParamsPanel

defineOptions(JChemSearchOptions) - Method in interface com.im.df.query.JChemSearchConfigurator

Set the search options from the settings specified

defineOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.ExactSearchParamsPanel

defineOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.PerfectSearchParamsPanel

defineOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.SimilaritySearchParamsPanel

defineStereoOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.ExactSearchParamsPanel

defineStereoOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.PerfectSearchParamsPanel

defineTautomerOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.ExactSearchParamsPanel

defineTautomerOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.PerfectSearchParamsPanel

defineUndefinedRAtomOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.ExactSearchParamsPanel

defineVagueBondOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.ExactSearchParamsPanel

description - Variable in class com.im.df.query.JChemSearchCapability

determineBestColumnDefinition(DBType, String, int) - Static method in class com.im.df.impl.db.api.DBImplConstants

Utility method to determine the best column type to use.

DFComparators - Class in com.im.df.util.ui

DFComparators() - Constructor for class com.im.df.util.ui.DFComparators

DFContainerAccess<E extends DFItem> - Interface in com.im.df.spi.ddl

DFCustomizerSupport - Class in com.im.df.util

Utility object which can help with connecting Swing UI objects and properties of some java bean.

DFCustomizerSupport(JComponent, Map<String, JComponent>) - Constructor for class com.im.df.util.DFCustomizerSupport

DFEnvFeedbackAdapter - Class in com.im.df.util

DFEnvFeedbackAdapter(DFEnvironmentRO) - Constructor for class com.im.df.util.DFEnvFeedbackAdapter

DFNewTypeChangeProcessor<N extends DFItem,T extends ItemPersistentInfo> - Interface in com.im.df.impl.db.api

Interface that defines the events that have to be applied to the DIF model on receipt of a notification that a new DFItem has been added by IJC server.

DFObjectListCellRenderer - Class in com.im.df.util.ui

This class can be used as generic list cell renderer for all basic DFxxx objects: currently it can be used for any DFItem and DFNewType

DFObjectListCellRenderer() - Constructor for class com.im.df.util.ui.DFObjectListCellRenderer

DFObjectListCellRenderer(String) - Constructor for class com.im.df.util.ui.DFObjectListCellRenderer

DFObjectTreeCellRenderer - Class in com.im.df.util.ui

This class can be used as generic list cell renderer for all basic DFxxx objects: currently it can be used for any DFItem and DFNewType Copied from DFObjectListCellRenderer class.

DFObjectTreeCellRenderer() - Constructor for class com.im.df.util.ui.DFObjectTreeCellRenderer

DFObjectTreeCellRenderer(String) - Constructor for class com.im.df.util.ui.DFObjectTreeCellRenderer

DFSchemaAccess - Interface in com.im.df.spi.ddl

This interface is for DFSchema implementation creators or factories, and provides access to data structures beyond the public API.

DFUtils - Class in com.im.df.util

Class collecting a few generic static utilities methods.

DFUtils() - Constructor for class com.im.df.util.DFUtils

DFUtils.WeakSchemaPropertyChangeAdapter - Class in com.im.df.util

DFUtils.WeakSchemaPropertyChangeAdapter() - Constructor for class com.im.df.util.DFUtils.WeakSchemaPropertyChangeAdapter

doPaste(Object) - Method in class com.im.df.util.ui.SlowJChemInstancesProvider.MViewPaneEx

E

EDGE_DESTINATION_ASCENDING - Static variable in class com.im.df.util.ui.DFComparators

EDGE_DESTINATION_DESCENDING - Static variable in class com.im.df.util.ui.DFComparators

EDGE_ORIGIN_ASCENDING - Static variable in class com.im.df.util.ui.DFComparators

EDGE_ORIGIN_DESCENDING - Static variable in class com.im.df.util.ui.DFComparators

encodeOptions() - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated. Encode all current options in their string form.

encrypUserAndPass(Properties, Set<String>) - Static method in class com.im.df.impl.db.api.DBImplSchemaProvider

ENTITY_TYPE_JCHEMBASE - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of jchem entity type constant (see DFItem.getType()).

ENTITY_TYPE_JCHEMCART_JCHEMBASE - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of jchem cartridge based on a JChemBase table entity type constant (see DFItem.getType()).

ENTITY_TYPE_JCHEMCART_STANDARD - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of jchem cartridge based on a standard table entity type constant (see DFItem.getType()).

ENTITY_TYPE_STANDARD - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of standard entity type constant (see DFItem.getType()).

entityChanged(DFEntity, PropertyChangeEvent) - Method in class com.im.df.util.DFUtils.WeakSchemaPropertyChangeAdapter

equals(Object) - Method in class com.im.df.util.CTFavourite

ERROR_MISSING - Static variable in class com.im.df.util.CEValidatorRunner

ERROR_READONLY - Static variable in class com.im.df.util.CEValidatorRunner

ExactSearchParamsPanel - Class in com.im.df.query.ui

ExactSearchParamsPanel(JChemEntityCapability) - Constructor for class com.im.df.query.ui.ExactSearchParamsPanel

Creates new form ExactSearchParamsPanel

execute(DFEntity, String, boolean, DFField, DFEnvironmentRO, DFLock, DFLock) - Method in class com.im.df.query.JChemSearchCapability

executeOverlapAnalysis(DFEntity, DFEntity, String, boolean, DFField, DFEnvironmentRO, DFLock, DFLock) - Method in class com.im.df.query.JChemSearchCapability.AbstractStandardSearch

executeOverlapAnalysis(DFEntity, DFEntity, String, boolean, DFField, DFEnvironmentRO, DFLock, DFLock) - Method in class com.im.df.query.JChemSearchCapability.SimilaritySearch

executeOverlapAnalysis(DFEntity, DFEntity, String, boolean, DFField, DFEnvironmentRO, DFLock, DFLock) - Method in interface com.im.df.query.SearchCapability.SearchMode

EXPRESSION_TYPE_E_AND_E - Static variable in class com.im.df.impl.db.api.DBImplQueryConstants

EXPRESSION_TYPE_E_OR_E - Static variable in class com.im.df.impl.db.api.DBImplQueryConstants

EXPRESSION_TYPE_F_OP_F - Static variable in class com.im.df.impl.db.api.DBImplQueryConstants

EXPRESSION_TYPE_F_OP_V - Static variable in class com.im.df.impl.db.api.DBImplQueryConstants

F

FIELD_CHEMICAL_TERMS_BOOLEAN - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of boolean chemical terms field type constant (see DFItem.getType()).

FIELD_CHEMICAL_TERMS_FLOAT - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of float chemical terms field type constant (see DFItem.getType()).

FIELD_CHEMICAL_TERMS_INTEGER - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of integer chemical terms field type constant (see DFItem.getType()).

FIELD_CHEMICAL_TERMS_TEXT - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of text chemical terms field type constant (see DFItem.getType()).

FIELD_STANDARD_BINARY - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of standard BINARY field type constant (see DFItem.getType()).

FIELD_STANDARD_BOOLEAN - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of standard boolean field type constant (see DFItem.getType()).

FIELD_STANDARD_CALCULATED_BOOLEAN - Static variable in class com.im.df.impl.db.api.DBImplConstants

FIELD_STANDARD_CALCULATED_FLOAT - Static variable in class com.im.df.impl.db.api.DBImplConstants

FIELD_STANDARD_CALCULATED_INTEGER - Static variable in class com.im.df.impl.db.api.DBImplConstants

FIELD_STANDARD_CALCULATED_TEXT - Static variable in class com.im.df.impl.db.api.DBImplConstants

FIELD_STANDARD_DATE - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of standard date field type constant (see DFItem.getType()).

FIELD_STANDARD_FLOAT - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of standard float field type constant (see DFItem.getType()).

FIELD_STANDARD_INTEGER - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of standard integer field type constant (see DFItem.getType()).

FIELD_STANDARD_JCHEM_STRUCTURE - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of standard molecule field type constant (see DFItem.getType()).

FIELD_STANDARD_TEXT - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of standard text field type constant (see DFItem.getType()).

FIELD_STANDARD_TEXT_ARRAY - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of standard text field type constant (see DFItem.getType()).

FIELD_STANDARD_URL - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of standard URL field type constant (see DFItem.getType()).

FIELD_STANDARD_URL_DYN - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of standard dynamic URL field type constant (see DFItem.getType()).

fieldChanged(DFField, PropertyChangeEvent) - Method in class com.im.df.util.DFUtils.WeakSchemaPropertyChangeAdapter

fieldCount() - Method in interface com.im.df.core.ui.FieldUIBuilder

fieldCount() - Method in class com.im.df.core.ui.StandardFieldUIBuilder

FieldMimeTypeProperty - Class in com.im.df.core.ui

This extra property attaches mime-type to field.

FieldMimeTypeProperty() - Constructor for class com.im.df.core.ui.FieldMimeTypeProperty

FieldMimeTypeProperty.MimeType - Enum in com.im.df.core.ui

All used mime-types.

FieldUIBuilder - Interface in com.im.df.core.ui

FieldUIBuilder.ValidationState - Enum in com.im.df.core.ui

Determines how to treat null values.

FileFormatFieldProperty - Class in com.im.df.core.ui

FileFormatFieldProperty() - Constructor for class com.im.df.core.ui.FileFormatFieldProperty

FileFormatType - Enum in com.im.df.core.ui

fillQuery(DFTermExpression) - Method in class com.im.df.query.ui.AdvancedQueryUIBuilder

Defines any initial query whose terms should be displayed

filterModesByTableType() - Method in class com.im.df.query.StructureSearchCapability

FilterQueryAllowedProperty - Class in com.im.df.core.ui

FilterQueryAllowedProperty() - Constructor for class com.im.df.core.ui.FilterQueryAllowedProperty

findAllEntities(DFTermExpression, Set<DFEntity>) - Static method in class com.im.df.query.ui.QueryFactories

findAllFields(DFTermExpression, Set<DFField>, boolean) - Static method in class com.im.df.query.ui.QueryFactories

findDefaultOperator(DFField, boolean) - Method in class com.im.df.query.ui.QueryFactories.QueryTermFactory

Find the default operator for this field type, or the IGNORE operator

findIcon(Object) - Static method in class com.im.df.util.DFUtils

findIcon(Object, int) - Static method in class com.im.df.util.DFUtils

findIcon(Object, int) - Method in interface com.im.df.util.IconProvider

findMimeType(String) - Static method in enum com.im.df.core.ui.FieldMimeTypeProperty.MimeType

findPreferredWidgetType(DFTermExpression) - Method in class com.im.df.query.ui.QueryFactories.FieldOperatorValueQueryTermFactory

findPreferredWidgetType(DFTermExpression) - Method in class com.im.df.query.ui.QueryFactories.QueryTermFactory

findWidgetFactory(String) - Method in class com.im.df.query.ui.QueryFactories.QueryTermFactory

Find the widget factory of this type.

findWidgetFactory(DFTermExpression) - Method in class com.im.df.query.ui.QueryFactories.QueryTermFactory

Find the widget factory of this query.

finish() - Method in class com.im.df.util.DFEnvFeedbackAdapter

forItem(DFItem) - Static method in class com.im.df.util.DBNameUtils.DefaultValidator

FORM_VIEW_STANDARD - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of form designer view type constant (see DFItem.getType()).

fromXML(String) - Static method in class com.im.df.util.XAttributesUtils

G

generateIDsToOutput(int[], DFField, DFEntityDataProvider, DFEnvironmentRW) - Method in class com.im.df.query.JChemSearchCapability

GenericInstancesProvider<T> - Class in com.im.df.util

Cache for generic type of instances created ahead, before they are needed.

GenericInstancesProvider(String, GenericInstancesProvider.Type, String, int, int) - Constructor for class com.im.df.util.GenericInstancesProvider

GenericInstancesProvider.Type - Enum in com.im.df.util

getAllAcceptors() - Static method in class com.im.df.impl.db.api.DBImplBackdoor

Get all the different types of DFDataAcceptor TODO - DIF API move this methods to API

getAllFavouritesGroupedByType() - Static method in class com.im.df.util.CTFavouritesUtils

getAllFavouritesGroupedByType(String) - Static method in class com.im.df.util.CTFavouritesUtils

getAllSchemas(DatabasePlatform, DFEnvironmentRO) - Static method in class com.im.df.impl.db.api.DBImplBackdoor

Returns a map of schema ID -> schema name of all schemas in the database, never null.

getAllTableTypesAsList() - Static method in class com.im.df.util.JChemTableUtils

Get all the JChem table types in the following order: MOLECULES, REACTIONS, MARKUSH_LIBRARIES, QUERY_STRUCTURES, ANY_STRUCTURES

getBuildVersion() - Method in interface com.im.df.util.IJCVersionProvider

Get version build string usually in date format "YYMMDD", e.g.

getButton() - Method in class com.im.df.query.ui.ChemicalTermsEditor

getCacheSize() - Method in class com.im.df.util.CachingMap

getCapabilityToAddToSchema() - Method in interface com.im.df.impl.db.api.DBImplSchemaProvider.PropsProviderExtra

getChemicalTermsTextPaneProvider() - Static method in class com.im.df.util.ui.SlowJChemInstancesProvider

MViewPaneEx instances provider

getChemTermErrorMessage() - Method in class com.im.df.query.ui.StructureQueryPanel

Get error message for Chemical expression

getChemTermsFilter() - Method in class com.im.df.query.ui.StructureQueryPanel

getChemTermsFilter() - Method in class com.im.df.query.ui.StructureQueryWidget

getColumnNamesFor(DBTableInfo, String[]) - Static method in class com.im.df.util.DBNameUtils

getComponent() - Method in interface com.im.df.core.ui.FieldUIBuilder

getComponent() - Method in class com.im.df.core.ui.StandardFieldUIBuilder

getComponent() - Method in class com.im.df.query.ui.AdvancedQueryUIBuilder

getComponentAfter(Container, Component) - Method in class com.im.df.core.ui.CustomFocusTraversalPolicy

getComponentBefore(Container, Component) - Method in class com.im.df.core.ui.CustomFocusTraversalPolicy

getCtUtils() - Method in class com.im.df.util.CTValidatorRunner

getCurrentOptions() - Method in class com.im.df.query.ui.StructureQueryPanel

getDataTreeAccess() - Method in interface com.im.df.spi.ddl.DFSchemaAccess

Provides SPI access to Data Tree container

getDefaultComponent(Container) - Method in class com.im.df.core.ui.CustomFocusTraversalPolicy

getDescription() - Method in enum com.im.df.core.ui.FileFormatType

getDescription() - Method in class com.im.df.query.JChemSearchCapability

getDescription() - Method in interface com.im.df.query.SearchCapability.SearchMode

getDisplayName() - Method in class com.im.df.core.ui.CaseInsensitiveProperty

getDisplayName() - Method in class com.im.df.core.ui.FieldMimeTypeProperty

getDisplayName() - Method in class com.im.df.core.ui.FileFormatFieldProperty

getDisplayName() - Method in class com.im.df.core.ui.FilterQueryAllowedProperty

getDisplayName() - Method in class com.im.df.util.CTFavourite

Get the display name of the CT favourite

getDoubleBondStereoSearchMode() - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

getEditorComponent() - Method in class com.im.df.query.ui.ChemicalTermsEditor

Get a component to use as the complete editor (JTextField plus button to open main editor).

getEntityAccess() - Method in interface com.im.df.spi.ddl.DFSchemaAccess

Provides SPI access to Entity container

getEnvironment() - Method in class com.im.df.util.UIBackgroundRunnerRO

getEnvironment() - Method in class com.im.df.util.UIBackgroundRunnerRW

getErrorMessage() - Method in class com.im.df.query.ui.ChemicalTermsEditor

getErrorMessage() - Method in class com.im.df.util.DFCustomizerSupport

getErrors() - Method in class com.im.df.query.ui.AdvancedQueryUIBuilder

getExpression() - Method in class com.im.df.core.ui.ChemicalTermsFieldPanel

getExpression() - Method in class com.im.df.query.ui.ChemicalTermsEditor

getExpression() - Method in class com.im.df.util.CTFavourite

Get the expression of the chemical terms favourite

getExtension() - Method in enum com.im.df.core.ui.FileFormatType

getExtras(DFField) - Method in interface com.im.df.core.ui.FieldUIBuilder

getExtras(DFField) - Method in class com.im.df.core.ui.StandardFieldUIBuilder

getFavourites() - Method in interface com.im.df.util.CTFavouritesProvider

Get all favourites registered to the system.

getFavouritesForType(Class<? extends DFFieldDataTypeCapability>) - Static method in class com.im.df.util.CTFavouritesUtils

Get set of Chemical terms favourites for the given type.

getFavouritesForType(Class<? extends DFFieldDataTypeCapability>, String) - Static method in class com.im.df.util.CTFavouritesUtils

Get set of Chemical terms favourites for the given type.

getFavouritesProvider() - Static method in class com.im.df.util.CTFavouritesUtils

Obtain a default implementation of Chemical terms favourites provider.

getField() - Method in class com.im.df.query.ui.StructureQueryPanel

getField() - Method in class com.im.df.query.ui.StructureQueryWidget

getFieldAccess(DFEntity) - Method in interface com.im.df.spi.ddl.DFSchemaAccess

Provides SPI access to Field container

getFieldTypeDisplayName(String) - Static method in class com.im.df.impl.db.api.DBImplConstants

Get display name for the specific type constant.

getFirstComponent(Container) - Method in class com.im.df.core.ui.CustomFocusTraversalPolicy

getId() - Method in class com.im.df.util.DFEnvFeedbackAdapter

getIJCVersionProvider() - Static method in class com.im.df.util.DFUtils

Get the current IJC version number

getLastComponent(Container) - Method in class com.im.df.core.ui.CustomFocusTraversalPolicy

getLicensedTableTypesAsArray() - Static method in class com.im.df.util.JChemTableUtils

See the List form of this method

getLicensedTableTypesAsList() - Static method in class com.im.df.util.JChemTableUtils

Get the JChem table types that are licensed.

getListAccess(DFEntity) - Method in interface com.im.df.spi.ddl.DFSchemaAccess

Provides SPI access to Lists

getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class com.im.df.util.ui.CTFieldUIUtils.FavouritesCellRenderer

getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class com.im.df.util.ui.CTFieldUIUtils.TypesCellRenderer

getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class com.im.df.util.ui.DFObjectListCellRenderer

getMaxExecutionTime() - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

getMaxLength() - Method in class com.im.df.util.DBNameUtils.DefaultValidator

Get maximum possible dbNames length.

getMaxResultCount() - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

getMolecule() - Method in class com.im.df.query.ui.StructureQueryPanel

getMolecule() - Method in class com.im.df.query.ui.StructureQueryWidget

getMSketcherProvider() - Static method in class com.im.df.util.ui.SlowJChemInstancesProvider

MSketchPane instances provider

getMViewPaneProvider() - Static method in class com.im.df.util.ui.SlowJChemInstancesProvider

MViewPaneEx instances provider

getName() - Method in class com.im.df.query.JChemSearchCapability

getName() - Method in interface com.im.df.query.SearchCapability.SearchMode

getNameWithNextNumber(String, char, int) - Static method in class com.im.df.util.DBNameUtils

getNew() - Method in class com.im.df.util.GenericInstancesProvider

getOperator() - Method in class com.im.df.query.ui.StructureQueryPanel

getOperatorsCombo() - Method in class com.im.df.query.ui.StructureQueryPanel

getOperatorsCombo() - Method in class com.im.df.query.ui.StructureQueryWidget

getOverlapCapabilties(Class) - Method in interface com.im.df.query.SearchCapability

getOverlapCapabilties(Class) - Method in class com.im.df.query.StructureSearchCapability

getParametersPanel() - Method in class com.im.df.query.JChemSearchCapability

getParametersPanel() - Method in interface com.im.df.query.SearchCapability.SearchMode

getPopularity() - Method in class com.im.df.util.CTFavourite

Get a value, how frequent (popular) is this favourite.

getPreferredSize() - Method in class com.im.df.util.ui.SlowJChemInstancesProvider.MViewPaneEx

getPriorityForColumn(DFNewTypeWellKnownOptions.ExistingDBField, DBColInfo) - Static method in class com.im.df.impl.db.api.NTUtils

Get the priority score for how well this new type implementation supports the specified column.

getPropertyName() - Method in class com.im.df.core.ui.CaseInsensitiveProperty

getPropertyName() - Method in class com.im.df.core.ui.FieldMimeTypeProperty

getPropertyName() - Method in class com.im.df.core.ui.FileFormatFieldProperty

getPropertyName() - Method in class com.im.df.core.ui.FilterQueryAllowedProperty

getQuery() - Method in class com.im.df.query.ui.AdvancedQueryUIBuilder

getRelationshipAccess() - Method in interface com.im.df.spi.ddl.DFSchemaAccess

Provides SPI access to the relationship container

getRequestProcessor() - Method in class com.im.df.util.CEValidatorRunner

getRequestProcessor() - Method in class com.im.df.util.CTValidatorRunner

getRequestProcessor() - Method in class com.im.df.util.UIBackgroundRunnerRW

We need single thread request processor per lockable.

getReturnNonHits() - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

getSchema() - Method in interface com.im.df.spi.ddl.DFSchemaAccess

Returns the DFSchema itself

getScreeningConfig() - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

getSearchCapabilties(Class) - Method in interface com.im.df.query.SearchCapability

getSearchCapabilties(Class) - Method in class com.im.df.query.StructureSearchCapability

getSearchOptions() - Method in class com.im.df.query.JChemSearchCapability

getSearchOptions() - Method in interface com.im.df.query.SearchCapability.SearchMode

getSearchType() - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

getSearchType() - Method in class com.im.df.query.JChemSearchCapability

getSearchType() - Method in interface com.im.df.query.SearchCapability.SearchMode

The JChemSearch type as defined in SearchConstants

getSelectedCharacterset() - Method in class com.im.df.core.ui.CharsetChooser

getSelectedCharacterset(Charset) - Method in class com.im.df.core.ui.CharsetChooser

getShortDescription() - Method in class com.im.df.core.ui.CaseInsensitiveProperty

getShortDescription() - Method in class com.im.df.core.ui.FieldMimeTypeProperty

getShortDescription() - Method in class com.im.df.core.ui.FileFormatFieldProperty

getShortDescription() - Method in class com.im.df.core.ui.FilterQueryAllowedProperty

getShortDescription(DFTermExpression) - Method in class com.im.df.query.ui.QueryFactories.StructureQueryWidgetFactory

getShortDescription(DFTermExpression) - Method in class com.im.df.query.ui.QueryFactories.WidgetFactory

Get a description of this query term that should be displayed whilst the widget is dispalyed.

getShortDescritpionForSingleFieldQuery(List<DFTerm>) - Static method in class com.im.df.query.ui.QueryFactories

getShortQueryWidgetDescription(DFTermExpression) - Static method in class com.im.df.query.ui.QueryFactories

getSimilarityThreshold() - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

getSimilarityThreshold() - Method in class com.im.df.query.JChemSearchCapability.SimilaritySearch

Getter for property similarityThreshold.

getSimilarityThreshold() - Method in class com.im.df.query.ui.SimilaritySearchParamsPanel

Getter for property similarityThreshold.

getStandardDataAcceptors() - Static method in class com.im.df.impl.db.api.DBImplBackdoor

Utility method to get the data acceptors for the standard field types.

getStandardizerProvider() - Static method in class com.im.df.util.ui.SlowJChemInstancesProvider

MViewPaneEx instances provider

getStereoSearchMode() - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

getSupportedStructureMimeTypes() - Static method in class com.im.df.core.ui.FieldMimeTypeProperty

getTags() - Method in class com.im.df.core.ui.CharactersetPropertyEditor

getTextField() - Method in class com.im.df.query.ui.ChemicalTermsEditor

getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class com.im.df.util.ui.DFObjectTreeCellRenderer

getType() - Method in class com.im.df.query.ui.QueryFactories.CompositeQueryTermFactory

getType() - Method in class com.im.df.query.ui.QueryFactories.FieldOperatorValueQueryTermFactory

getType() - Method in class com.im.df.query.ui.QueryFactories.QueryTermFactory

The type is used as a hint so that the query term can be executed without having to make guesses about how to interpret it.

getType() - Method in class com.im.df.query.ui.QueryFactories.StructureQueryTermFactory

getType() - Method in class com.im.df.query.ui.QueryFactories.StructureQueryWidgetFactory

getType() - Method in class com.im.df.query.ui.QueryFactories.WidgetFactory

The type is used as a hint so that the correct widget can be selected for a query term that requests this type.

getType() - Method in class com.im.df.util.CTFavourite

Expected default return type - one of the DFFieldDataTypeCapability subinterfaces.

getValidateNullLevel() - Method in interface com.im.df.core.ui.FieldUIBuilder

getValidateNullLevel() - Method in class com.im.df.core.ui.StandardFieldUIBuilder

getValue() - Method in enum com.im.df.core.ui.FieldMimeTypeProperty.MimeType

getValue(DFField) - Method in interface com.im.df.core.ui.FieldUIBuilder

Gets the value that was entered for the specified field.

getValue(DFField) - Method in class com.im.df.core.ui.StandardFieldUIBuilder

getValue(Integer) - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated. Gets the value for the specified key.

getValues() - Method in interface com.im.df.core.ui.FieldUIBuilder

Gets the entered values for all fields as a map.

getValues() - Method in class com.im.df.core.ui.StandardFieldUIBuilder

getVersion() - Method in interface com.im.df.util.IJCVersionProvider

Get version string, for example "2.0", "2.0.2", "Development version", etc.

getViewAccess(DFDataTree) - Method in interface com.im.df.spi.ddl.DFSchemaAccess

Provides SPI access to Views

GRID_VIEW_STANDARD - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of grid view type constant (see DFItem.getType()).

H

handleErrors(TermErrors) - Method in class com.im.df.query.ui.StructureQueryWidget

hasErrors() - Method in interface com.im.df.core.ui.FieldUIBuilder

Checks if there are validation errors.

hasErrors() - Method in class com.im.df.core.ui.StandardFieldUIBuilder

hashCode() - Method in class com.im.df.util.CTFavourite

hasWarnings() - Method in interface com.im.df.core.ui.FieldUIBuilder

Checks if there are validation warnings.

hasWarnings() - Method in class com.im.df.core.ui.StandardFieldUIBuilder

I

IconProvider - Interface in com.im.df.util

This interface is used for resolving icons of generic objects in DIF.

IJC_LICENSE - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

IJC_PASSWORD - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

IJC_USERNAME - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

IJCJChemSearchOptions - Class in com.im.df.query

Deprecated. This class is only used to restore old-type options. JChemSearchOptions should be used directly.

IJCJChemSearchOptions() - Constructor for class com.im.df.query.IJCJChemSearchOptions

Deprecated.

IJCJChemSearchOptions(IJCJChemSearchOptions) - Constructor for class com.im.df.query.IJCJChemSearchOptions

Deprecated. Create search options based on an existing set of values

IJCVersionProvider - Interface in com.im.df.util

initAtomOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.ExactSearchParamsPanel

initHomologyOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.ExactSearchParamsPanel

initOptions(JChemSearchOptions) - Method in interface com.im.df.query.JChemSearchConfigurator

Set the UI based on these options.

initOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.ExactSearchParamsPanel

initOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.PerfectSearchParamsPanel

initOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.SimilaritySearchParamsPanel

initQueryTerm(DFTermExpression) - Method in class com.im.df.query.ui.StructureQueryPanel

initialization of query panel by using query term

initQueryTerm(DFTermExpression) - Method in class com.im.df.query.ui.StructureQueryWidget

initStereoOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.ExactSearchParamsPanel

initStereoOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.PerfectSearchParamsPanel

initTautomerOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.ExactSearchParamsPanel

initTautomerOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.PerfectSearchParamsPanel

initUndefinedRAtomOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.ExactSearchParamsPanel

initVagueBondOptions(JChemSearchOptions) - Method in class com.im.df.query.ui.ExactSearchParamsPanel

INVISIBLE_VALUE - Static variable in class com.im.df.util.DFCustomizerSupport

isCancelled() - Method in class com.im.df.util.DFEnvFeedbackAdapter

isCompatible(DFItem) - Method in class com.im.df.core.ui.CaseInsensitiveProperty

isCompatible(DFItem) - Method in class com.im.df.core.ui.FieldMimeTypeProperty

isCompatible(DFItem) - Method in class com.im.df.core.ui.FileFormatFieldProperty

isCompatible(DFItem) - Method in class com.im.df.core.ui.FilterQueryAllowedProperty

isCorrectFormatName(String) - Static method in class com.im.df.util.DBNameUtils

isDataValid() - Method in class com.im.df.util.DFCustomizerSupport

isForceReadOnly() - Method in class com.im.df.util.DFCustomizerSupport

isIgnoreBeanChanges() - Method in class com.im.df.util.DFCustomizerSupport

isIgnoreWidgetChanges() - Method in class com.im.df.util.DFCustomizerSupport

isModified() - Method in class com.im.df.util.DFCustomizerSupport

isMustExist() - Method in class com.im.df.util.DBNameUtils.DefaultValidator

isShowFieldForOtherUsersList() - Method in class com.im.df.util.ui.DFObjectListCellRenderer

Shows field name as part of item name in the case of DFNewTypeWellKnownOptions.ListUserItemDescription.

isShowFieldForOtherUsersList() - Method in class com.im.df.util.ui.DFObjectTreeCellRenderer

Shows field name as part of item name in the case of DFNewTypeWellKnownOptions.ListUserItemDescription.

isShowIcons() - Method in class com.im.df.core.ui.StandardFieldUIBuilder

Getter for property showIcons.

isSQLReservedWord(String) - Static method in class com.im.df.util.DBNameUtils

J

JCHEM_SEARCH_OPTIONS - Static variable in interface com.im.df.query.JChemSearchConstants

key for structure search options

jchemCapability - Variable in class com.im.df.query.ui.JChemSearchParametersPanel

JChemSearchCapability - Class in com.im.df.query

JChemSearchCapability() - Constructor for class com.im.df.query.JChemSearchCapability

JChemSearchCapability.AbstractStandardSearch - Class in com.im.df.query

JChemSearchCapability.AbstractStandardSearch(DBEntityAbstractJChemImpl, String, String, int) - Constructor for class com.im.df.query.JChemSearchCapability.AbstractStandardSearch

JChemSearchCapability.DuplicateSearch - Class in com.im.df.query

JChemSearchCapability.DuplicateSearch(DBEntityAbstractJChemImpl) - Constructor for class com.im.df.query.JChemSearchCapability.DuplicateSearch

JChemSearchCapability.FullFragmentSearch - Class in com.im.df.query

JChemSearchCapability.FullFragmentSearch(DBEntityAbstractJChemImpl) - Constructor for class com.im.df.query.JChemSearchCapability.FullFragmentSearch

JChemSearchCapability.FullSearch - Class in com.im.df.query

JChemSearchCapability.FullSearch(DBEntityAbstractJChemImpl) - Constructor for class com.im.df.query.JChemSearchCapability.FullSearch

JChemSearchCapability.SimilaritySearch - Class in com.im.df.query

JChemSearchCapability.SimilaritySearch(DBEntityAbstractJChemImpl) - Constructor for class com.im.df.query.JChemSearchCapability.SimilaritySearch

JChemSearchCapability.SubstructureSearch - Class in com.im.df.query

JChemSearchCapability.SubstructureSearch(DBEntityAbstractJChemImpl) - Constructor for class com.im.df.query.JChemSearchCapability.SubstructureSearch

JChemSearchCapability.SuperstructureSearch - Class in com.im.df.query

JChemSearchCapability.SuperstructureSearch(DBEntityAbstractJChemImpl) - Constructor for class com.im.df.query.JChemSearchCapability.SuperstructureSearch

JChemSearchConfigurator - Interface in com.im.df.query

JChemSearchConstants - Interface in com.im.df.query

TODO - refactoring needed

JChemSearchParametersPanel - Class in com.im.df.query.ui

JChemSearchParametersPanel(JChemEntityCapability) - Constructor for class com.im.df.query.ui.JChemSearchParametersPanel

JChemTableUtils - Class in com.im.df.util

JChemTableUtils() - Constructor for class com.im.df.util.JChemTableUtils

L

licenseKeys - Variable in class com.im.df.impl.db.api.CreateSchemaInfo

License keys

LIST_STANDARD - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of list type constant (see DFItem.getType()).

loadPropertiesFromResource(String) - Static method in class com.im.df.util.DFUtils

logResult(Object, List<String>, DFFeedback) - Method in class com.im.df.query.JChemSearchCapability

M

makeXmlPretty(String) - Static method in class com.im.df.util.DFUtils

makeXmlPretty(Document) - Static method in class com.im.df.util.DFUtils

MAX_DB_IDENTIFIER_LENGTH - Static variable in class com.im.df.util.DBNameUtils

The default maximum identifier name.

MAX_DFITEM_ITEM_NAME_LENGTH - Static variable in class com.im.df.util.DBNameUtils

The default maximum identifier name

MimeTypeCustomizerComponent - Class in com.im.df.core.ui

Customizer for mime-type extra property.

MoleculeIterator - Interface in com.im.df.core

N

name - Variable in class com.im.df.query.JChemSearchCapability

next() - Method in interface com.im.df.core.MoleculeIterator

Get the next Molecule, or null if we've read them all

normalizeName(String) - Method in class com.im.df.util.DBNameUtils.DefaultValidator

normalizeName(SchemaQualifiedName) - Method in class com.im.df.util.DBNameUtils.DefaultValidator

normalizeName(String, boolean) - Method in class com.im.df.util.DBNameUtils.DefaultValidator

normalizeName(String) - Method in interface com.im.df.util.DBNameUtils.Validator

Return acceptable db name

normalizeName(SchemaQualifiedName) - Method in interface com.im.df.util.DBNameUtils.Validator

NTUtils - Class in com.im.df.impl.db.api

NTUtils() - Constructor for class com.im.df.impl.db.api.NTUtils

O

opts - Variable in class com.im.df.query.JChemSearchCapability

P

paramsPanel - Variable in class com.im.df.query.JChemSearchCapability

PerfectSearchParamsPanel - Class in com.im.df.query.ui

PerfectSearchParamsPanel(JChemEntityCapability) - Constructor for class com.im.df.query.ui.PerfectSearchParamsPanel

Creates new form PerfectSearchParamsPanel

phase1Cancelled(CancelException) - Method in class com.im.df.util.UIBackgroundRunnerRO

phase1Cancelled(CancelException) - Method in class com.im.df.util.UIBackgroundRunnerRW

phase1Exception(Exception) - Method in class com.im.df.util.UIBackgroundRunnerRO

phase1Exception(Exception) - Method in class com.im.df.util.UIBackgroundRunnerRW

phase1FinallyInternal() - Method in class com.im.df.util.UIBackgroundRunnerRO

phase1FinallyInternal() - Method in class com.im.df.util.UIBackgroundRunnerRW

phase1InRequestProcessor() - Method in class com.im.df.util.CEValidatorRunner

phase1InRequestProcessor() - Method in class com.im.df.util.CTValidatorRunner

phase2InAWT() - Method in class com.im.df.util.CEValidatorRunner

phase2InAWT() - Method in class com.im.df.util.CTValidatorRunner

platform - Variable in class com.im.df.impl.db.api.CreateSchemaInfo

The database platform to use.

POPULARITY_DEFAULT - Static variable in class com.im.df.util.CTFavourite

Medium (default) importance of template

POPULARITY_MAX - Static variable in class com.im.df.util.CTFavourite

Often used template - will be in top of the list when sorted by popularity

POPULARITY_MIN - Static variable in class com.im.df.util.CTFavourite

Less frequent (important) template

prepareFields(String, DFEntity, DFEnvironmentRW) - Method in class com.im.df.query.JChemSearchCapability.DuplicateSearch

prepareFields(String, DFEntity, DFEnvironmentRW) - Method in class com.im.df.query.JChemSearchCapability.FullFragmentSearch

prepareFields(String, DFEntity, DFEnvironmentRW) - Method in class com.im.df.query.JChemSearchCapability.FullSearch

prepareFields(String, DFEntity, DFEnvironmentRW) - Method in class com.im.df.query.JChemSearchCapability

prepareFields(String, DFEntity, DFEnvironmentRW) - Method in class com.im.df.query.JChemSearchCapability.SimilaritySearch

prepareFields(String, DFEntity, DFEnvironmentRW) - Method in class com.im.df.query.JChemSearchCapability.SubstructureSearch

prepareFields(String, DFEntity, DFEnvironmentRW) - Method in class com.im.df.query.JChemSearchCapability.SuperstructureSearch

prepareFieldsStandard(String, DFEntity, DFEnvironmentRW) - Method in class com.im.df.query.JChemSearchCapability

processMouseEvent(MouseEvent) - Method in class com.im.df.util.ui.SlowJChemInstancesProvider.MViewPaneEx

Overridden to make public so that mousse events can be delegated to this component

processSearch(int, Object, SearchHandler, boolean, int, DFField[], DFEntityDataProvider, DFEntityDataProvider, boolean, DFField, DFEnvironmentRW) - Method in class com.im.df.query.JChemSearchCapability.AbstractStandardSearch

processSearch(int, Object, SearchHandler, boolean, int, DFField[], DFEntityDataProvider, DFEntityDataProvider, boolean, DFField, DFEnvironmentRW) - Method in class com.im.df.query.JChemSearchCapability

processSearch(int, Object, SearchHandler, boolean, int, DFField[], DFEntityDataProvider, DFEntityDataProvider, boolean, DFField, DFEnvironmentRW) - Method in class com.im.df.query.JChemSearchCapability.SimilaritySearch

processStandardSearch(int, Object, SearchHandler, boolean, int, DFField[], DFEntityDataProvider, DFEntityDataProvider, boolean, DFField, DFEnvironmentRW) - Method in class com.im.df.query.JChemSearchCapability

progress(int) - Method in class com.im.df.util.DFEnvFeedbackAdapter

PROP_CT_EXPR_VALID - Static variable in class com.im.df.core.ui.ChemicalTermsFieldPanel

PROPERTY_NAME - Static variable in class com.im.df.core.ui.FieldMimeTypeProperty

ExtraDFItem property name.

propertyChange(PropertyChangeEvent) - Method in class com.im.df.util.DFCustomizerSupport

propertyChange(PropertyChangeEvent) - Method in class com.im.df.util.DFUtils.WeakSchemaPropertyChangeAdapter

propertyTableName - Variable in class com.im.df.impl.db.api.CreateSchemaInfo

JChem properties table name.

propertyValueChanged(String, JComponent) - Method in class com.im.df.util.DFCustomizerSupport

Q

QUERY_OPTIONS_EXPRESSION_TYPE - Static variable in class com.im.df.impl.db.api.DBImplQueryConstants

QUERY_STANDARD - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of query type constant (see DFItem.getType()).

QUERY_TERM_CREATOR - Static variable in class com.im.df.query.ui.QueryFactories

The type of widget that created this query term

QUERY_TERM_TYPE - Static variable in class com.im.df.query.ui.QueryFactories

The type of query term e.g.

QueryFactories - Class in com.im.df.query.ui

QueryFactories(DFDataTree, DBDatabaseInfo, String) - Constructor for class com.im.df.query.ui.QueryFactories

Creates a new instance of QueryWidgetFactory

QueryFactories(DFEntity) - Constructor for class com.im.df.query.ui.QueryFactories

Queries for only this Entity.

QueryFactories(DFDataTree) - Constructor for class com.im.df.query.ui.QueryFactories

Queries for this data tree, including relational queries

QueryFactories.CompositeQueryTermFactory - Class in com.im.df.query.ui

QueryFactories.CompositeQueryTermFactory() - Constructor for class com.im.df.query.ui.QueryFactories.CompositeQueryTermFactory

QueryFactories.FieldOperatorValueQueryTermFactory - Class in com.im.df.query.ui

QueryFactories.FieldOperatorValueQueryTermFactory() - Constructor for class com.im.df.query.ui.QueryFactories.FieldOperatorValueQueryTermFactory

QueryFactories.QueryTermFactory - Class in com.im.df.query.ui

QueryFactories.QueryTermFactory() - Constructor for class com.im.df.query.ui.QueryFactories.QueryTermFactory

QueryFactories.StructureQueryTermFactory - Class in com.im.df.query.ui

QueryFactories.StructureQueryTermFactory() - Constructor for class com.im.df.query.ui.QueryFactories.StructureQueryTermFactory

QueryFactories.StructureQueryWidgetFactory - Class in com.im.df.query.ui

QueryFactories.StructureQueryWidgetFactory() - Constructor for class com.im.df.query.ui.QueryFactories.StructureQueryWidgetFactory

QueryFactories.WidgetFactory - Class in com.im.df.query.ui

Factory for query widgets

QueryFactories.WidgetFactory() - Constructor for class com.im.df.query.ui.QueryFactories.WidgetFactory

queryUpdated() - Method in class com.im.df.query.ui.StructureQueryPanel.Callback

inform that query is updated

R

readProperties() - Method in interface com.im.df.impl.db.api.DBImplSchemaProvider.PropsProvider

Read the properties from file.

registerDefaultWidgetFactory(QueryFactories.WidgetFactory) - Method in class com.im.df.query.ui.QueryFactories.QueryTermFactory

Register a widget factory for this type of query term.

registerItem(E, boolean, DFEnvironmentRW) - Method in interface com.im.df.spi.ddl.DFContainerAccess

Register an item into the container.

registerToEntity(DFEntity, boolean) - Method in class com.im.df.util.DFUtils.WeakSchemaPropertyChangeAdapter

registerToSchema(DFSchema, boolean) - Method in class com.im.df.util.DFUtils.WeakSchemaPropertyChangeAdapter

registerWidgetFactory(QueryFactories.WidgetFactory) - Method in class com.im.df.query.ui.QueryFactories.QueryTermFactory

Register a widget factory for this type of query term.

RELATIONSHIP_TYPE_DB - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of relationship type constant (see DFItem.getType()).

reloadQuery() - Method in class com.im.df.query.ui.AdvancedQueryUIBuilder

removeAccents(String) - Static method in class com.im.df.util.DBNameUtils

Replace chars with accent if possible.

removeChangeListener(ChangeListener) - Method in class com.im.df.query.ui.AdvancedQueryUIBuilder

removeChangeListener(ChangeListener) - Method in class com.im.df.query.ui.ChemicalTermsEditor

removeEldestEntry(Map.Entry<K, V>) - Method in class com.im.df.util.CachingMap

removeFavourite(CTFavourite) - Method in interface com.im.df.util.CTFavouritesProvider

Remove the favourite

removePropertyChangeListener(PropertyChangeListener) - Method in class com.im.df.util.DFEnvFeedbackAdapter

requestFocus(boolean) - Method in class com.im.df.core.ui.ChemicalTermsFieldPanel

requestFocus() - Method in class com.im.df.core.ui.ChemicalTermsFieldPanel

requestFocusInWindow() - Method in class com.im.df.core.ui.ChemicalTermsFieldPanel

reset() - Method in interface com.im.df.query.JChemSearchConfigurator

Reset to the initial values

reset() - Method in class com.im.df.query.ui.ExactSearchParamsPanel

Reset to the initial values

reset() - Method in class com.im.df.query.ui.PerfectSearchParamsPanel

Reset to the initial values

reset() - Method in class com.im.df.query.ui.SimilaritySearchParamsPanel

Reset to the initial values

resolveObjectDisplayName(Object) - Method in class com.im.df.util.ui.DFObjectTreeCellRenderer

resolveTreeNodeObject(Object) - Method in class com.im.df.util.ui.DFObjectTreeCellRenderer

restartWithNewPrarams(String, Class) - Method in class com.im.df.util.CEValidatorRunner

restartWithNewPrarams(String, Class) - Method in class com.im.df.util.CTValidatorRunner

rewriteProperties(Properties, List<String>) - Method in interface com.im.df.impl.db.api.DBImplSchemaProvider.PropsProvider

Overwrite and clear the specified properties.

S

SCHEMA_AUTO_CONNECT - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

SCHEMA_ID - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

SCHEMA_NAME - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

SCHEMA_TYPE_DB - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of DFSchema type constant (see DFItem.getType()).

schemaChanged(DFSchema, PropertyChangeEvent) - Method in class com.im.df.util.DFUtils.WeakSchemaPropertyChangeAdapter

schemaName - Variable in class com.im.df.impl.db.api.CreateSchemaInfo

The name of the new schema

schemaType - Variable in class com.im.df.impl.db.api.CreateSchemaInfo

The schema type identifier; right now, only one schema is supported, so the field is preinitialized and final.

SCRIPT_STANDARD - Static variable in class com.im.df.impl.db.api.DBImplConstants

Default DB implementation of query type constant (see DFItem.getType()).

SearchCapability - Interface in com.im.df.query

SearchCapability.SearchMode - Interface in com.im.df.query

searchType - Variable in class com.im.df.query.JChemSearchCapability

SERVER_IS_REMOTE - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

SERVER_PASSWORD - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

SERVER_URL - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

SERVER_USERNAME - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

Constant used by DBImplSchemaProvider.PropsProvider.

setActionListener(DFField, ActionListener) - Method in class com.im.df.core.ui.StandardFieldUIBuilder

setAsText(String) - Method in class com.im.df.core.ui.CharactersetPropertyEditor

setCacheSize(int) - Method in class com.im.df.util.CachingMap

setComponentsFocusable(boolean) - Method in class com.im.df.query.ui.StructureQueryPanel

setComponentsFocusable(boolean) - Method in class com.im.df.query.ui.StructureQueryWidget

setDataValid(boolean) - Method in class com.im.df.util.DFCustomizerSupport

setDoubleBondStereoSearchMode(Integer) - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

setErrorMessage(String) - Method in class com.im.df.core.ui.ChemicalTermsFieldPanel

setErrorMessage(String) - Method in class com.im.df.util.DFCustomizerSupport

setExpression(String) - Method in class com.im.df.core.ui.ChemicalTermsFieldPanel

setExpression(String) - Method in class com.im.df.query.ui.ChemicalTermsEditor

setField(DFField) - Method in class com.im.df.query.ui.StructureQueryPanel

set field to modify optionsPanels

setFieldComponentTextValue(DFField, String) - Method in class com.im.df.core.ui.StandardFieldUIBuilder

setIgnoreBeanChanges(boolean) - Method in class com.im.df.util.DFCustomizerSupport

setIgnoreBeanChangesForThisPropertyOnly(String) - Method in class com.im.df.util.DFCustomizerSupport

setIgnoreWidgetChanges(boolean) - Method in class com.im.df.util.DFCustomizerSupport

setInsertButton(JButton) - Method in class com.im.df.core.ui.StandardFieldUIBuilder

setMaxExecutionTime(Integer) - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

setMaxLength(int) - Method in class com.im.df.util.DBNameUtils.DefaultValidator

Set maximum possible dbNames length.

setMaxResultCount(Integer) - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

setMessageLabel(JLabel) - Method in class com.im.df.core.ui.StandardFieldUIBuilder

setModified(boolean) - Method in class com.im.df.util.DFCustomizerSupport

setMustExist(boolean) - Method in class com.im.df.util.DBNameUtils.DefaultValidator

setPermanentItemKey(K) - Method in class com.im.df.util.CachingMap

setPreferredHeight(int) - Method in class com.im.df.util.ui.SlowJChemInstancesProvider.MViewPaneEx

setReferencedContentProvider(DFField, ReferencedContentProvider) - Method in class com.im.df.core.ui.StandardFieldUIBuilder

setResult(String) - Method in class com.im.df.util.CEValidatorRunner

setResult(String) - Method in class com.im.df.util.CTValidatorRunner

setReturnNonHits(Boolean) - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

setScreeningConfig(String) - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

setSearchType(int) - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

setShowFieldForOtherUsersList(boolean) - Method in class com.im.df.util.ui.DFObjectListCellRenderer

Shows field name as part of item name in the case of DFNewTypeWellKnownOptions.ListUserItemDescription.

setShowFieldForOtherUsersList(boolean) - Method in class com.im.df.util.ui.DFObjectTreeCellRenderer

Shows field name as part of item name in the case of DFNewTypeWellKnownOptions.ListUserItemDescription.

setShowIcons(boolean) - Method in class com.im.df.core.ui.StandardFieldUIBuilder

Setter for property showIcons.

setSimilarityThreshold(Float) - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

setSimilarityThreshold(float) - Method in class com.im.df.query.JChemSearchCapability.SimilaritySearch

Setter for property similarityThreshold.

setSimilarityThreshold(float) - Method in class com.im.df.query.ui.SimilaritySearchParamsPanel

Setter for property similarityThreshold.

setStereoSearchMode(String) - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

setValidateNullLevel(FieldUIBuilder.ValidationState) - Method in interface com.im.df.core.ui.FieldUIBuilder

setValidateNullLevel(FieldUIBuilder.ValidationState) - Method in class com.im.df.core.ui.StandardFieldUIBuilder

setValue(Integer, Integer) - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated. Sets the specified value.

setValue(String) - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated. Set the value from its String form.

setValues(List<String>) - Method in class com.im.df.query.IJCJChemSearchOptions

Deprecated.

SHOW_OPTIONS_DB_USERNAME - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

SHOW_OPTIONS_IJC_USERNAME - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

SHOW_OPTIONS_IJCSERVER_USERNAME - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

SHOW_OPTIONS_MODE_SELECT - Static variable in class com.im.df.impl.db.api.DBImplSchemaProvider

showChemTermsEditorPopup(String) - Static method in class com.im.df.core.ui.ChemicalTermsFieldPanel

Shows a dialog to edit chemical terms.

showChemTermsEditorPopup() - Method in class com.im.df.query.ui.ChemicalTermsEditor

showOptionsPopup() - Method in class com.im.df.query.ui.StructureQueryPanel

SimilaritySearchParamsPanel - Class in com.im.df.query.ui

SimilaritySearchParamsPanel(JChemEntityCapability) - Constructor for class com.im.df.query.ui.SimilaritySearchParamsPanel

Creates new form SimilaritySearchParamsPanel

SlowJChemInstancesProvider - Class in com.im.df.util.ui

Cache for MViewPaneEx (simple extension of MViewPane) and MSketchPane instances created ahead, before they are needed.

SlowJChemInstancesProvider.MViewPaneEx - Class in com.im.df.util.ui

Simple extension of MViewPane just because of setting minimum preferred height and handle programmatic paste of structures.

StandardFieldUIBuilder - Class in com.im.df.core.ui

StandardFieldUIBuilder() - Constructor for class com.im.df.core.ui.StandardFieldUIBuilder

Creates a new instance of StandardFieldUIBuilder.

start() - Method in class com.im.df.util.UIBackgroundRunnerRO

stopEditing() - Method in class com.im.df.query.ui.StructureQueryWidget

StructureFieldFormatCustomizerComponent - Class in com.im.df.core.ui

StructureQueryPanel - Class in com.im.df.query.ui

StructureQueryPanel(StructureQueryPanel.Callback) - Constructor for class com.im.df.query.ui.StructureQueryPanel

Creates new form StructureQueryWidget

StructureQueryPanel.Callback - Class in com.im.df.query.ui

StructureQueryPanel.Callback() - Constructor for class com.im.df.query.ui.StructureQueryPanel.Callback

StructureQueryWidget - Class in com.im.df.query.ui

StructureQueryWidget(DFDataTree) - Constructor for class com.im.df.query.ui.StructureQueryWidget

Creates new form StructureQueryWidget

StructureSearchCapability - Class in com.im.df.query

StructureSearchCapability(DBEntityAbstractJChemImpl) - Constructor for class com.im.df.query.StructureSearchCapability

Creates a new instance of StructureSearchCapability

supportsCustomEditor() - Method in class com.im.df.core.ui.CharactersetPropertyEditor

supportsTableType(int) - Method in class com.im.df.query.JChemSearchCapability.AbstractStandardSearch

Default accepts everything.

supportsTableType(int) - Method in class com.im.df.query.JChemSearchCapability.FullFragmentSearch

supportsTableType(int) - Method in class com.im.df.query.JChemSearchCapability.SimilaritySearch

supportsTableType(int) - Method in class com.im.df.query.JChemSearchCapability.SubstructureSearch

supportsTableType(int) - Method in class com.im.df.query.JChemSearchCapability.SuperstructureSearch

supportsTableType(int) - Method in interface com.im.df.query.SearchCapability.SearchMode

Is this search type supported for the specified table type

switchToDeterminate(int) - Method in class com.im.df.util.DFEnvFeedbackAdapter

switchToIndeterminate() - Method in class com.im.df.util.DFEnvFeedbackAdapter

T

tableTypeNeedsLicense(int) - Static method in class com.im.df.util.JChemTableUtils

Are the correct licenses present for this JChem table type

target - Variable in class com.im.df.query.JChemSearchCapability

toString() - Method in class com.im.df.core.ui.CaseInsensitiveProperty

toString() - Method in enum com.im.df.core.ui.FieldMimeTypeProperty.MimeType

toString() - Method in class com.im.df.core.ui.FieldMimeTypeProperty

toString() - Method in class com.im.df.core.ui.FileFormatFieldProperty

toString() - Method in enum com.im.df.core.ui.FileFormatType

toString() - Method in class com.im.df.core.ui.FilterQueryAllowedProperty

toXML(Map<String, String>) - Static method in class com.im.df.util.XAttributesUtils

TYPE - Static variable in class com.im.df.query.ui.QueryFactories.CompositeQueryTermFactory

TYPE - Static variable in class com.im.df.query.ui.QueryFactories.FieldOperatorValueQueryTermFactory

TYPE - Static variable in class com.im.df.query.ui.QueryFactories.StructureQueryTermFactory

TYPE - Static variable in class com.im.df.query.ui.QueryFactories.StructureQueryWidgetFactory

U

UIBackgroundRunnerRO - Class in com.im.df.util

Important: The link to BackgroundRunner generated by javadoc tool is broken.

UIBackgroundRunnerRO(String, boolean) - Constructor for class com.im.df.util.UIBackgroundRunnerRO

UIBackgroundRunnerRW - Class in com.im.df.util

Important: The link to BackgroundRunner generated by javadoc tool is broken.

UIBackgroundRunnerRW(DFLockable, String, boolean) - Constructor for class com.im.df.util.UIBackgroundRunnerRW

UNKNOWN_TYPE - Static variable in class com.im.df.impl.db.api.DBImplConstants

Special case constant.

updateComponentsEnableStatus(boolean, PropertiesEditingConfigurable) - Method in class com.im.df.util.DFCustomizerSupport

updateValid() - Method in class com.im.df.query.ui.StructureQueryPanel.Callback

validation query

updateValid() - Method in class com.im.df.query.ui.StructureQueryWidget

Overridden to add chem terms validation and to check that we have either a structure or a chem terms filter or both

V

validate(DFField, String) - Method in class com.im.df.core.ui.CaseInsensitiveProperty

validate(DFField, String) - Method in class com.im.df.core.ui.FieldMimeTypeProperty

validate(DFField, String) - Method in class com.im.df.core.ui.FileFormatFieldProperty

validate(DFEntity, String) - Method in class com.im.df.core.ui.FilterQueryAllowedProperty

validate(String) - Method in class com.im.df.util.DBNameUtils.DefaultValidator

validate(String) - Method in interface com.im.df.util.DBNameUtils.Validator

Validate the name.

validateExpression() - Method in class com.im.df.query.ui.ChemicalTermsEditor

validateExpression(String, Class<?>, boolean) - Method in class com.im.df.util.ChemicalTermsExpressionUtils

Validate the chemical terms expression.

VALIDATOR_ACCEPTING_ALL - Static variable in class com.im.df.util.DBNameUtils

This is dummy implementation which accepts all strings

VALUE_STEREO_EXACT - Static variable in interface com.im.df.query.JChemSearchConstants

VALUE_STEREO_OFF - Static variable in interface com.im.df.query.JChemSearchConstants

VALUE_STEREO_ON - Static variable in interface com.im.df.query.JChemSearchConstants

This property must contain a String value of one of the VALUE_STEREO properties

valueOf(String) - Static method in enum com.im.df.core.ui.FieldMimeTypeProperty.MimeType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.im.df.core.ui.FieldUIBuilder.ValidationState

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.im.df.core.ui.FileFormatType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.im.df.impl.db.api.DBImplSchemaProvider.ShowOpts

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.im.df.util.DBNameUtils.VType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.im.df.util.GenericInstancesProvider.Type

Returns the enum constant of this type with the specified name.

values() - Static method in enum com.im.df.core.ui.FieldMimeTypeProperty.MimeType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.im.df.core.ui.FieldUIBuilder.ValidationState

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.im.df.core.ui.FileFormatType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.im.df.impl.db.api.DBImplSchemaProvider.ShowOpts

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.im.df.util.DBNameUtils.VType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.im.df.util.GenericInstancesProvider.Type

Returns an array containing the constants of this enum type, in the order they are declared.

W

widgetFactories - Variable in class com.im.df.query.ui.QueryFactories.QueryTermFactory

widgetValueChanged(String, JComponent) - Method in class com.im.df.util.DFCustomizerSupport

WRAPPER - Static variable in class com.im.df.impl.db.api.DBImplConstants

X

XAttributesUtils - Class in com.im.df.util

XAttributesUtils() - Constructor for class com.im.df.util.XAttributesUtils

A B C D E F G H I J L M N O P Q R S T U V W X