All Classes

AbbrevGroupRecognizer AbbreviatedGroupChecker AboutDialogFactory AbsoluteStereoFixer AbstractAlchemistMoleculeEditor AbstractAlchemistMoleculeEditor.MoleculeIndexArray AbstractAlchemistMoleculeView AbstractConfigElementEditor AbstractConfigurationReader AbstractConfigurationWriter AbstractMRecordReader AbstractSketchConfigElement AbstractStructureChecker AbstractStructureFixer Alchemist AlchemistApplication AlchemistApplication.AboutAction AlchemistApplication.DefaultActionConfigurer AlchemistApplication.ExitApplicationAction AlchemistApplication.HelpAction AlchemistApplication.LicenseManagerAction AlchemistApplication.NewDocumentAction AlchemistApplication.OpenDocumentAction AlchemistApplication.SaveDocumentAction AlchemistApplication.SaveDocumentAsAction AlchemistApplicationInnerDialog AlchemistApplicationLicenseHandlerInnerDialog AlchemistBanner AlchemistBrowserLauncher AlchemistComponentSet AlchemistController AlchemistDashedBorder AlchemistError AlchemistFileChooser AlchemistFileTextBox AlchemistGlassPage AlchemistGraphicsUtilities AlchemistIconFactory AlchemistLabel AlchemistLaunchable AlchemistLauncher AlchemistLinearMoleculeView AlchemistMoleculeEditor AlchemistMoleculePainter AlchemistMoleculeUtilities AlchemistMoleculeView AlchemistMViewAccessory AlchemistPage AlchemistProfile AlchemistProfileSupport AlchemistProgressLabel AlchemistProgressMonitor AlchemistSpinBox AlchemistSplashScreen AlchemistState AlchemistTableSizeConfigurerComponent AlchemistTask AlchemistUtilities AlchemistWaitPanel AliasChecker Alignment AlignmentPlugin AlignmentType AngleMonitor AromaticityCheckerResult ArrayMDocSource AtomChecker AtomContext AtomMapChecker AtomProperty AtomValueChecker AttachedDataChecker AutoMapper Base64Recognizer BasicConfigElement BasicConfigElementEditor BCUT BCUTGenerator BCUTParameters BondAngleChecker BondChecker BondLengthChecker BoundingBox CalculatorPlugin CalculatorPluginDisplay CalculatorPluginOutput Cancelable CDParameters CEdge CellOrComponentId CFGenerator CFParameters CGraph ChargePlugin CheckBoxList CheckerRunner CheckerRunnerImpl ChemContext ChemicalFingerprint ChemicalTermsWS ChemJEP ChimeRecognizer CleanFixer CleanUtil ClipboardHandler ClipboardHandler CNode CodeAssistFactory Common Compare ComponentChecker ComponentElement CompositeInputProducer CompositeWorkUnit CompositeWorkUnitFactory ConcurrentProcessor ConcurrentProcessors ConcurrentReactorProcessor ConcurrentStandardizerProcessor ConfigBuilderPanel ConfigBuilderPanelFactory ConfigElement ConfigElementEditor ConfigElementFactory ConfigElementListCellRenderer ConfigElementPresentationChooser ConfigElementSketchEditor ConfigElementTransferHandler ConfigurationReader ConfigurationReaderFactory ConformerPlugin ConnectionHandler ConnectionWS ContractGroupFixer Control ConvertAliasToGroupFixer ConvertToAtomFixer ConvertToCarbonFixer CopyOptConstants CrossedDoubleBondChecker CrossedDoubleBondFixer CTransform3D CubeRecognizer CustomDescriptor CutBondReviser DatabaseConstants DatabaseProperties DatabaseSearchException DatabaseTools DataManipulationWS DataSgroup Decomposition DefaultPluginWorkUnit DefaultStructureCheckerResult DihedralControl DihedralMonitor DihedralRotator DispOptConsts DistanceMonitor DocumentExtractor DotfileUtil DPoint3 ElementalAnalyser ElementalAnalyserPlugin EnumerationPlugin ErrorHandler ErrorProcessor Evaluator ExhaustiveFragmenter Expandable ExpandGroupFixer ExplicitHydrogenResult Exporter ExternalEditorSupport ExternalStructureChecker ExternalStructureCheckerResult FileFilterFactory FileListHandlerPanel FingerprintGenerator Fixes FixesExternal FlexibleAlignment Fragmenter GenerateMD GeometryPlugin GlobalLocationControl GlobalOrientationControl GraphicCell GraphicComponent GraphicScene HAcc HashCode HBDAPlugin HBParameters HDon Heavy HelpTextPanelFactory HitColoringAndAlignmentOptions HitDisplayTool HitDisplayUtil HTMLTools HTMLUtil HuckelAnalysisPlugin HybridizationStateConsts ImageExportUtil Importer Incomplecule InnerMarvinSketch InputProducer IntArray IonChargePlugin IsoelectricPointPlugin IsotopeChecker IsotopeFixer IteratorFactory IUPACNamingPlugin JarvisPatrick JChemSearch JChemSearch.DissimilarityMetrics JChemSearchOptions JChemSearchWS JTFRecognizer Label LDParameters LibraryMCS LicenseManager ListableMolecule LocalLocationControl LocalOrientationControl LogD logDPlugin LogP logPPlugin MacroMoleculeComponent MacroMoleculeComponent.MoleculeVisualizer MajorMicrospeciesAccessorPlugin MajorMicrospeciesPlugin MapMoleculeFixer MapReactionFixer MarkushEnumerationPlugin MarkushGenerator MarvinPane MarvinPaneBeanInfo MarvinTransferable Mass MatchCountOptions MAtomSetPoint MaxSearchFrequencyExceededException MBooleanProp MBracket MChemicalStruct MCollectionProp MCS MDArrayReader MDDBReader MDDBWriter MDFileReader MDFileWriter MDHitEvaluator MDHypothesisCreator MDHypothesisGenerator MdlCompressor MDMetricOptimizer MDocSource MDocStorage MDocStorage.Listener MDocument MDocument.CheckerMark MDoubleArrayProp MDoubleProp MDParameters MDReader MDSet MDSetParameters MDSimilarity MDSimilarityResultWriter MDTableHandler MDWriter MeasurementMonitor MEFlow MEFlowBasePoint MEllipse Metabolizer MetabolizerConstants MetabolizerException MetabolizerExporter MetabolizerFileExporter MetabolizerFileImporter MetabolizerImporter MetabolizerIndexGenerator MetabolizerIOException MetabolizerMemoryExporter MetabolizerMemoryImporter MetabolizerProperties MetabolizerTemporaryFileStorage MetabolizerTemporaryMemoryStorage MetabolizerTemporaryStorage MetabolizerUtilities Metrics MFieldAccessor MFileFormat MFileFormatUtil MFont MHashProp MHCoords3DProp MIntegerArrayProp MIntegerProp MissingAtomMapChecker MListProp MMidPoint MMidPoint.Sticky MMoleculeProp MObject MObjectProp MolAligner MolAtom MolBond MolComparator MolCondition MolContext MolConverter MolConverter.Builder MolConverter.Options MolConvertWS MolecularDescriptor MolecularDescriptorGenerator MolecularDynamicsPlugin MolecularSurfaceComponent Molecule MoleculeChargeChecker MoleculeComponent MoleculeGraph MoleculeIterator MoleculeIteratorFactory MoleculeListCellRenderer MoleculeTableCellEditor MoleculeTableCellRenderer MoleculeUtil MolExport MolExporter MolExportException MolExportException MolExportModule MolExportModule MolfileUtil MolFilter MolFormatException MolFragLoader MolHandler MolImageSize MolImport MolImporter MolImportModule MolInputProducer MolInputStream MolPrinter MolRenderer MolSearch MolSearchOptions Monitor MPainterUtil MPoint MPolyline MProgressMonitor MProp MPropertyContainer MRecord MRecordImporter MRecordParseException MRecordReader MRecordReader.Position MRectangle MRectanglePoint MRectanglePoint.Sticky MRoundedRectangle MSAPlugin MSelectionDocument MSketch MSketchPane MSketchPaneBeanInfo MSpaceEasy MStringProp MTextAttributes MTextBox MTextDocument MTextDocument.Section MTransferable MTransformable MultiCenterChecker MultipleSgroup MView MViewEditor MViewPane MViewPaneBeanInfo MViewParams MViewRenderer NameConverter NameConverters NameFormatException NamePrefixException NearestNeighbors NumberedComboBoxRenderer NumberedRenderer OptimizeMetrics OptionDescriptor OptionsPane OrbitalElectronegativityPlugin OverlappingAtomsChecker OverlappingBondsChecker PairedAlign ParameterConstants ParameterPanel ParameterPanelHandler ParameterTab PDBRecognizer PeptideRecognizer PeriodicSystem PFParameters PharmacophoreArrow PharmacophoreFingerprint PharmacophorePoint pKaPlugin PluginException PluginExecutionException PluginFactory PluginWorkUnit PMap PMapper PolarizabilityPlugin PositionedInputStream PositionMonitor ProgressPanel ProgressWriter ProgressWriter.Logger PropertyNotSetException PseudoAtomChecker PSymbols QueryAtomChecker QueryBond QueryBondChecker RadicalChecker ReactantSetEnumeration Reaction ReactionChecker ReactionContext ReactionException ReactionFingerprint Reactor ReactorWS RearomatizeFixer Recap Recognizer RecognizerList RefractivityPlugin RegenerationChecker RegenerationConstants RelAdminWS RelSearchWS RemoveAtomFixer RemoveAtomMapFixer RemoveAtomValueFixer RemoveAttachedDataFixer RemoveBondFixer RemoveRadicalFixer RepeatingUnitSgroup ResizeControl ResonancePlugin ReusableInputProducer ReusablePluginWorkUnit RFGenerator RFParameters RgDecompResults RgMolecule RGroupDecomposition RigidAlignment RxnMolecule ScalarDescriptor ScrollableCellEditor SDParameters Search SearchConstants SearchContext SearchOptions SelectionMolecule Sgroup SgroupAtom SgroupCheckerResult Similarity SimilarityCalculator SimilarityCalculatorFactory SimilarityCalculatorFactory.Representation SimpleAlchemistMoleculeView SketchParameterConstants SMILESRecognizer Smolecule StandardizedMolSearch Standardizer Standardizer StandardizerException StandardizerWS StereoConstants StereoisomerPlugin StructuralFrameworksPlugin StructuralFrameworksPlugin.FrameworkTypes StructuralFrameworksPlugin.VerbosePrinter StructureChecker StructureCheckerErrorType StructureCheckerResult StructureFixer StructureTableOptions SuperatomSgroup SurfaceColoring SurfaceComponent SwingUtil SwingWorker TableOptions TableStatistics TableSupport TableTypeConstants TaskScheduler TautomerizationPlugin ThreeDimensionChecker TopologyAnalyser TopologyAnalyserPlugin TPSA TPSAPlugin TransferableDescriptor TransferException UngroupFixer UpdateHandler UpdateHandler.RowData UpdateHandlerException Updater UploadThread UserSettings ValenceFixer VersionInfo VersionInfo ViewParameterConstants Ward WigglyDoubleBondChecker WigglyDoubleBondFixer WorkUnit WorkUnitFactory WSmolecule XMLBasedConfigurationReader