All Classes

AbbrevGroupRecognizer AbbreviatedGroupChecker AbsoluteStereoFixer AbstractMRecordReader AbstractStructureChecker AbstractStructureFixer AdvancedCheckerRunner AliasChecker Alignment AlignmentAccuracyMode AlignmentMolecule AlignmentMoleculeFactory AlignmentMoleculeFactory.ProgressBarInterface AlignmentPlugin AlignmentProperties AlignmentProperties.ColoringScheme AlignmentProperties.ColorNotSpecifiedCase AlignmentProperties.NodeType AlignmentProperties.OrientationType AlignOnPairedAtoms AlignRigidEasy AngleMonitor AromaticityCheckerResult AromaticityErrorChecker ArrayMDocSource AsyncCallback AtomChecker AtomContext AtomMapChecker AtomProperty AtomQueryPropertyChecker AtomValueChecker AtropIsomerDetector AtropIsomerDetector.Accuracy AttachedDataChecker AutoMapper Base64Recognizer BasicCheckerRunner BCUT BCUTGenerator BCUTParameters BondAngleChecker BondChecker BondLengthChecker BoundingBox CacheRegistrationUtil CalculatorPlugin CalculatorPluginDisplay CalculatorPluginOutput Cancelable CDParameters CEdge CellOrComponentId CFGenerator CFParameters CGraph ChargePlugin CheckerRunner CheckerRunnerImpl ChemContext ChemicalFingerprint ChemJEP ChimeRecognizer Cleaner CleanFixer CleanUtil ClipboardHandler ClipboardHandler CNode CodeAssistFactory CodeAssistFactory.CodeAssistConfiguration ColorGenerator Common CompactMarkushViewer Compare ComponentChecker ComponentElement CompositeInputProducer CompositeWorkUnit CompositeWorkUnitFactory ConcurrentProcessor ConcurrentProcessors ConcurrentReactorProcessor ConcurrentStandardizerProcessor ConfigBuilderPanel ConfigBuilderPanelFactory ConfigElement ConfigElementEditor ConfigElementFactory ConfigurationReader ConformerPlugin ConnectionHandler ContractGroupFixer Control ConvertAliasToGroupFixer ConvertPseudoToGroupFixer ConvertToAtomFixer ConvertToCarbonFixer CoordinationSystemErrorChecker CopyOptConstants CrossedDoubleBondChecker CrossedDoubleBondFixer CTransform3D CubeRecognizer CustomDescriptor CutBondReviser DatabaseConstants DatabaseProperties DatabaseSearchException DatabaseTools DataSgroup Decomposition DefaultPluginWorkUnit DefaultStructureCheckerResult DescriptorGenerator DihedralControl DihedralMonitor DihedralRotator DispOptConsts DistanceMonitor DocumentExtractor DocumentExtractor.ProgressInfo DocumentExtractor.ProgressListener DocumentToStructure DotfileUtil DoubleBondStereoErrorChecker DPoint3 DynamicArgument ECFP ECFPFeature ECFPFeatureLookup ECFPGenerator ECFPParameters ElementalAnalyser ElementalAnalyserPlugin EnumerationPlugin ErrorHandler ErrorProcessor Evaluator ExhaustiveFragmenter Expandable ExpandGroupFixer ExplicitHydrogenResult Exporter ExternalStructureChecker ExternalStructureCheckerResult FingerprintGenerator Fixes FixesExternal FormulaSearch Fragmenter GenerateMD GeometryPlugin GlobalLocationControl GlobalOrientationControl GraphicCell GraphicComponent GraphicScene HAcc HashCode HBDAPlugin HBParameters HDon Heavy HitColoringAndAlignmentOptions HitDisplayTool HitDisplayUtil HomologyTranslationOption HTMLTools HTMLUtil HTTPServiceDescriptor HuckelAnalysisPlugin HybridizationStateConsts Hydrogenize ImageExportUtil Importer Incomplecule InputProducer IntArray IonChargePlugin IsoelectricPointPlugin IsotopeChecker IsotopeFixer IteratorFactory IUPACNamingPlugin JarvisPatrick JChemSearch JChemSearch.DissimilarityMetrics JChemSearchOptions JsonServiceDescriptor JsonServiceDescriptor.Method JTFRecognizer Label LDParameters LibraryMCS LicenseManager LocalLocationControl LocalOrientationControl LocalServiceDescriptor LogD logDPlugin LogP logPPlugin MacroMoleculeComponent MacroMoleculeComponent.MoleculeVisualizer MajorMicrospeciesAccessorPlugin MajorMicrospeciesPlugin MapMoleculeFixer MapReactionFixer MarkushEnumerationPlugin MarkushFeature MarkushGenerator MarkushTagger MarvinPane MarvinPaneBeanInfo MarvinTransferable Mass MatchCountOptions MAtomSetPoint MaxSearchFrequencyExceededException MBooleanProp MBracket MCES MCES.SearchMode MCES.TerminationCause MChemicalStruct MCollectionProp MCS MDArrayReader MDDBReader MDDBWriter MDFileReader MDFileWriter MDGenerator MDGeneratorException MDHitEvaluator MDHypothesisCreator MDHypothesisGenerator MdlCompressor MDMetricOptimizer MDocSource MDocStorage MDocStorage.Listener MDocument MDocument.CheckerMark MDoubleArrayProp MDoubleProp MDParameters MDParametersException MDReader MDReaderException MDSet MDSetParameters MDSimilarity MDSimilarityResultWriter MDTableHandler MDWriter MDWriterException MeasurementMonitor MEFlow MEFlowBasePoint MEllipse Metabolizer MetabolizerConstants MetabolizerException MetabolizerExporter MetabolizerFileExporter MetabolizerFileImporter MetabolizerImporter MetabolizerIOException MetabolizerMemoryExporter MetabolizerMemoryImporter MetabolizerProperties MetabolizerTemporaryFileStorage MetabolizerTemporaryMemoryStorage MetabolizerTemporaryStorage MetabolizerUtilities MetalloceneErrorChecker MetalloceneFixer Metrics MetricsType MFieldAccessor MFileFormat MFileFormatUtil MFont MHashProp MHCoords3DProp MinMaxDistance MIntegerArrayProp MIntegerProp MissingAtomMapChecker MListProp MMidPoint MMidPoint.Sticky MMoleculeProp MObject MObjectProp MolAligner MolAtom MolBond MolComparator MolCondition MolContext MolConverter MolConverter.Builder MolConverter.Options MolecularDescriptor MolecularDescriptorGenerator MolecularDynamicsPlugin MolecularSurfaceComponent Molecule MoleculeChargeChecker MoleculeComponent MoleculeFragmenter MoleculeGraph MoleculeGraph.ValenceCheckState MoleculeIterator MoleculeIteratorFactory MoleculeUtil MolExport MolExporter MolExportException MolExportException MolExportModule MolExportModule MolfileUtil MolFilter MolFormatException MolFragLoader MolFragLoader.RgroupAttachmentCountFilter MolHandler MolImageSize MolImport MolImporter MolImportModule MolImportModule.PreferredView MolInputProducer MolInputStream MolPrinter MolRenderer MolSearch MolSearchOptions Monitor MPoint MPolyline MProp MPropertyContainer MPropHandler MRecord MRecordImporter MRecordParseException MRecordReader MRecordReader.Position MRectangle MRectanglePoint MRectanglePoint.Sticky MRoundedRectangle MSAPlugin MSelectionDocument MSketch MSketchPane MSketchPaneBeanInfo MSpaceEasy MStringProp MTextAttributes MTextBox MTextDocument MTextDocument.Section MTransferable MTransformable MultiCenterChecker MultipleSgroup MView MViewEditor MViewPane MViewPaneBeanInfo MViewParams MViewRenderer NameConverter NameConverters NameFormatException NameFormatException.FilteredCase NamePrefixException NearestNeighbors NMRCalculator OptionDescriptor OptionsPane OrbitalElectronegativityPlugin OverlappingAtomsChecker OverlappingBondsChecker PairwiseAlignment PairwiseComparison PairwiseSimilarity3D ParameterConstants ParameterPanel ParameterPanelHandler ParameterTab PartialCleanFixer PDBRecognizer PeptideRecognizer PeriodicSystem PFGenerator PFParameters Pharmacophore3D PharmacophoreArrow PharmacophoreFingerprint PharmacophorePoint pKaPlugin PluginException PluginExecutionException PluginFactory PluginWorkUnit PMap PMapper PolarizabilityPlugin PositionedInputStream PositionMonitor PredictorPlugin ProgressWriter ProgressWriter.Logger PropertyNotSetException PseudoAtomChecker PSymbols QueryAtomChecker QueryBond QueryBondChecker RadicalChecker RatomChecker ReactantSetEnumeration Reaction ReactionChecker ReactionContext ReactionException ReactionFingerprint ReactionMapErrorChecker Reactor RearomatizeFixer RecalculationException Recap Recognizer RecognizerList RefractivityPlugin RegenerationChecker RegenerationConstants RemoveAtomFixer RemoveAtomMapFixer RemoveAtomValueFixer RemoveAttachedDataFixer RemoveBondFixer RemoveRadicalFixer RepeatingUnitSgroup ResizeControl ResonancePlugin ReusableInputProducer ReusablePluginWorkUnit RFGenerator RFParameters RgDecompResults RgMolecule RgroupAttachmentErrorChecker RGroupDecomposition RgroupReferenceErrorChecker RingStrainErrorChecker RotatableBondDetector RxnMolecule ScalarDescriptor SDParameters Search SearchConstants SearchContext SearchHit SearchOptions SelectionMolecule ServiceArgument ServiceDescriptorEditor ServiceDescriptorEditorProvider ServiceDescriptorReader ServiceDescriptorTools ServiceDescriptorWriter ServiceDialogProvider ServiceException ServiceHandler SetOfSmallestRingsOption Sgroup SgroupAtom SgroupCheckerResult ShapeDescriptor ShapeGenerator ShapeParameters Similarity SimilarityCalculator SimilarityCalculatorFactory SimilarityCalculatorFactory.Representation SketchCheckerRunner SketchParameterConstants SmartsAtomQuerifier SMILESRecognizer Smolecule SoapServiceDescriptor StandardizedMolSearch Standardizer Standardizer StandardizerException Stereochemistry StereoConstants StereoisomerPlugin StrucFPConfig StructuralFrameworksPlugin StructuralFrameworksPlugin.FrameworkTypes StructuralFrameworksPlugin.VerbosePrinter StructureChecker StructureCheckerErrorType StructureCheckerResult StructureFixer StructureTableOptions SuperatomSgroup SurfaceColoring SurfaceComponent SwingUtil TableOptions TableStatistics TableSupport TableTypeConstants TaskScheduler TautomerizationPlugin ThreeDimensionChecker TopologyAnalyser TopologyAnalyserPlugin TPSA TPSAPlugin TransferableDescriptor TransferException UnbalancedReactionChecker UngroupFixer UpdateHandler UpdateHandler.RowData UpdateHandlerException Updater UploadThread UserSettings ValenceErrorChecker ValenceFixer ValencePropertyChecker VersionInfo VersionInfo ViewParameterConstants Ward WedgeErrorChecker WigglyDoubleBondChecker WigglyDoubleBondFixer WorkUnit WorkUnitFactory WSmolecule XMLBasedConfigurationReader XMLRPCServiceDescriptor