Package chemaxon.fixers

Structure fixers can be used to fix problems identified by structure checker instances.

See:
Description

Interface Summary

StructureFixer

A StructureFixer can fix a Molecule problem identified by a StructureCheckerResult

Class Summary

AbsoluteStereoFixer	A StructureFixer implementation which removes absolute stereo property from the molecule.
AbstractStructureFixer	This class is the default abstract implementation of StructureFixer interface
CleanFixer	A descendant of AbstractStructureFixer which cleans the molecule in 2d
ContractGroupFixer	A descendant of AbstractStructureFixer which contracts the abbreviated groups in the molecule
ConvertAliasToGroupFixer	A descendant of AbstractStructureFixer which converts the aliases to contracted abbreviated groups in the molecule
ConvertPseudoToGroupFixer	A descendant of AbstractStructureFixer which converts the pseudo informations to contracted abbreviated groups in the molecule
ConvertToAtomFixer	A descendant of AbstractStructureFixer which converts the aliases to atom with atom number contained in the alias information
ConvertToCarbonFixer	A descendant of AbstractStructureFixer which converts pseudo atoms to carbon atoms
CrossedDoubleBondFixer	A descendant of AbstractStructureFixer which converts crossed double bond to wiggly
ExpandGroupFixer	A descendant of AbstractStructureFixer which expands all abbreviated groups in the molecule
IsotopeFixer	A descendant of AbstractStructureFixer which converts the isotopes to non isotope atoms
MapMoleculeFixer	A descendant of AbstractStructureFixer which maps the atoms of the molecule incrementally
MapReactionFixer	A descendant of AbstractStructureFixer which maps the reaction with AutoMapper
MetalloceneFixer	A descendant of AbstractStructureFixer which converts a single incorrectly drawn metallocene into multicenter based coordinate bond representation.
PartialCleanFixer	WARNING!
RearomatizeFixer	A descendant of AbstractStructureFixer which rearomatize the molecule
RemoveAtomFixer	A descendant of AbstractStructureFixer which removes the atoms of the molecule signed in the result
RemoveAtomMapFixer	A descendant of AbstractStructureFixer which removes the atom maps from the molecule
RemoveAtomValueFixer	A descendant of AbstractStructureFixer which removes the atom value from the molecule
RemoveAttachedDataFixer	A descendant of AbstractStructureFixer which removes the attached data from the molecule
RemoveBondFixer	A descendant of AbstractStructureFixer which removes the bonds of the molecule signed by the result
RemoveRadicalFixer	A descendant of AbstractStructureFixer which removes the radicals from the atoms of the molecule
UngroupFixer	A descendant of AbstractStructureFixer which ungroups all abbreviated groups in the molecule
ValenceFixer	A descendant of AbstractStructureFixer which fixes valence problem in the molecule if it is possible with removing explicit hydrogens or by adding charge
WigglyDoubleBondFixer	A descendant of AbstractStructureFixer which sets wiggly bond to crossed double bond

Annotation Types Summary

Fixes	This annotation is used to annotate the StructureFixer implementations which StructureCheckerErrorType can be fixed by the current fixer
FixesExternal	This annotation is used to annotate the StructureFixer implementations which error codes (identified by a unqie String) can be fixed by the current fixer

Package chemaxon.fixers Description

Structure fixers can be used to fix problems identified by structure checker instances.