chemaxon.pharmacophore
Class PSymbols

java.lang.Object
  chemaxon.pharmacophore.PSymbols

public class PSymbols
extends java.lang.Object

Class storing and sorting pharmacophore symbols.

Since:

JChem 2.0

Author:

Nora Mate

Constructor Summary

PSymbols(java.util.Collection psymbols)
Constructor.

PSymbols(java.lang.String[] psymbols)
Constructor.

Method Summary

int	getIndex(java.lang.String symbol) Gets the index associated of the specified symbol.
java.lang.String	getSymbol(int i) Gets the symbol at the given index.
int	getSymbolCount() returns the number of symbols

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PSymbols

public PSymbols(java.lang.String[] psymbols)

Constructor. Sorts and sets the symbols.

Parameters:

psymbols - is the symbol array

PSymbols

public PSymbols(java.util.Collection psymbols)

Constructor. Sorts and sets the symbols.

Parameters:

psymbols - is the symbol collection

Method Detail

getSymbolCount

public int getSymbolCount()

returns the number of symbols

Returns:

the number of symbols

getSymbol

public java.lang.String getSymbol(int i)

Gets the symbol at the given index.

Parameters:

i - is the symbol index

Returns:

the symbol string

Throws:

java.lang.IllegalArgumentException - if the symbol index is out-of-range

getIndex

public int getIndex(java.lang.String symbol)

Gets the index associated of the specified symbol.

Parameters:

symbol - pharmacophore property (feature) symbol

Returns:

the index of the feature

Throws:

java.lang.IllegalArgumentException - if the symbol is not found