MarvinSketch Applet Examples

Version 5.8.1

  1. Basic examples
    1. Embedding MarvinSketch applet in HTML pages
      The basic ways of creating Marvin Applets and embedding them in HTML pages.
    2. Setting canvas colors
      The color of the canvas can optionally be modified by applet parameters.
    3. Specify a custom splash screen image
      Specify a custom splash screen image to the MarvinSketch Applet.
    4. Show all implicit Hydrogen atoms
      How to remove explicit hydrogen atoms and show all implicit hydrogen atoms in applets.
    5. Structure templates
      Handling of custom and built-in template groups.
    6. Abbreviated groups
      Replacing the built-in abbreviated group collection with a custom one.
    7. GUI customization
      The Graphical User Interface is customized to use the ISIS/Draw-like configuration.
    8. GUI customization with serialized config file
      Read configuration of customized GUI from serialized config file.
    9. Preload of modules in MarvinSketch
      Certain modules are loaded in advance.
    10. Loading reaction query drawing module in advance
      Optimize MarvinSketch initalization for reaction query drawing.
  2. Query atoms, extra bond types, disabling elements
    Controlling the type of atoms and bonds to be used in the applet.
  3. Visualization, loading molecules
    1. Loading a molecule in visualization mode, using magnification
      Starting the applet in visualization (view only) mode i.e. the editing buttons cannot be seen.
    2. Working with inline, compressed molfiles
      Inline, compressed molfiles can decrease the download time of applets.
    3. Triggering molfile download from JavaScript, naming the applet
      Loading a molecule by pressing a HTML button.
    4. Import/export of built-in and user defined molecule formats in JavaScript
      Introducing molecule import/export with JavaScript using several molecular formats and HTML buttons.
    5. Pure visualization mode I
      Opening/closing MarvinSketch window by clicking on the image of the molecule.
    6. Pure visualization mode II
      Starting with a detached MarvinSketch window.
    7. Visualizing 3D structures
      How to convert the input structure to 3D.
    8. Resizeable sketcher
  4. Molecular property calculations
    1. Molecular property calculations with Chemical Terms
      Formulating chemical expressions with JavaScript.
    2. Calculating molecular properties on the fly
      Every time the molecule is altered, the Chemical Terms expressions are re-evaluated and the results are updated.
  5. Examples for browsers without Java - JavaScript communication
    1. Retrieving a structure
      Sending a structure from MarvinSketch to MarvinView for browsers without LiveConnect support.
    2. Import/export of structures
      Import/export of structures for browsers without LiveConnect support.
  6. Case studies - composite real-life examples
    1. Student examination
      Student examination example for lone pair and radical electron settings having all helper options disabled.
    2. Molecule transfer
      Editing the structures of a molecule table with MarvinSketch
 

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