MarvinView Applet Examples

Version 5.3.6

1. Viewing a molecule
   1. Embedding MarvinView applet in HTML pages
      The basic ways of creating Marvin Applets and embedding them in HTML pages.
2. Molecule tables
   1. Loading molecules from an SD file to a molecule table
      The simplest way of visualizing multi-molecule files in tabular format.
   2. Editing the structures of the molecule table with MarvinSketch
      Altering the structures of the molecule table with MarvinSketch, and transferring them back to the table.
   3. Creating an advanced molecule table
      Individual setting of the contents of each cells.
   4. Adding advanced components to molecule tables
      Placing labels, images in the table as additional components beside the molecules.
   5. Fine-tuning the layout
      Polishing the layout of the advanced components (labels, images) inside the cells.
   6. JavaScripting, CGI scripting using buttons and checkboxes
      Some more advanced components to place in the cells beside the molecules: buttons and checkboxes that trigger events.
3. Configuring MarvinView
   1. Compression, color, magnification, atom size, hydrogen labels
      Customizing some of the basic display settings.
   2. Background colors, 3D, rotation
      Setting up a molecule table in 3D view using automated rotation.
   3. 3D Viewer settings
      The 3D settings, automatic rotation and related options in focus.
   4. XYZ animations
      Creating a table where 3D motion of molecules is simulated and the animation of the cells is synchronized.
   5. Display stereo configurations
      Demonstrating options to visualize chirality and E/Z isomer information of molecules.
4. Manipulating table contents
   1. Editable table
      Using JavaScript to retrieve data to and from the applet.
   2. Atom coloring
      Highlighting a subset of atoms with a custom color.
   3. Coloring atom and bond sets
      Highlighting pre-defined sets of atoms and/or bonds using JavaScript.
5. Japanese character support
   East-Asian character support demonstrated by direct usage of Japanese characters as parameter values.
6. Events and Listeners
   1. Listening for events in applets
      Handling PropertyChange and MouseEvent events fired by the applets.
7. Molecular property calculations
   1. Molecular property calculations with Chemical Terms
      Accessing and evaluating Chemical Terms expressions using JavaScript.

 

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