chemaxon.formats.recognizer
Class PDBRecognizer

java.lang.Object
  chemaxon.formats.recognizer.Recognizer
      chemaxon.formats.recognizer.PDBRecognizer

public class PDBRecognizer
extends Recognizer

PDB format recognizer.

Since:

Marvin 5.0, 06/08/2007

Version:

5.0, 10/15/2007

Author:

Miklos Vargyas, Peter Csizmadia

Field Summary

static int	CAN_BE Line can be in the given format.
static int	NO Line is not in the given format.
static int	SURE Line is surely in the given format.

Constructor Summary

PDBRecognizer(java.lang.String fmt)
Creates an PDB format recognizer.

Method Summary

boolean	needsMore() Should we read more lines?
static int	testLine(java.lang.String line) Checks if the given parameter is a PDB record name.
static int	testRecord(java.lang.String recName) Checks if the given parameter is a PDB record name.
void	tryToRecognize(java.lang.String line, int linenum, RecognizerList reclist) Tries to recognize a line.

Methods inherited from class chemaxon.formats.recognizer.Recognizer

getLastProcessedLineNum, getPriority, isLastLine

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NO

public static final int NO

Line is not in the given format. Return value for testLine methods.

See Also:

Constant Field Values

CAN_BE

public static final int CAN_BE

Line can be in the given format. Return value for testLine methods.

See Also:

Constant Field Values

SURE

public static final int SURE

Line is surely in the given format. Return value for testLine methods.

See Also:

Constant Field Values

Constructor Detail

PDBRecognizer

public PDBRecognizer(java.lang.String fmt)

Creates an PDB format recognizer.

Parameters:

fmt - the codename of the format

Method Detail

tryToRecognize

public void tryToRecognize(java.lang.String line,
                           int linenum,
                           RecognizerList reclist)

Tries to recognize a line. If a format becomes impossible, then it is removed from the set of possible formats.

Specified by:

tryToRecognize in class Recognizer

Parameters:

line - the line

linenum - the line number

reclist - the list of recognizers

needsMore

public boolean needsMore()

Should we read more lines?

Specified by:

needsMore in class Recognizer

Returns:

true if more lines are needed, false otherwise

testLine

public static int testLine(java.lang.String line)

Checks if the given parameter is a PDB record name.

Parameters:

line - the line

Returns:

SURE if it is surely a PDB line, CAN_BE if it can be a PDB line, NO otherwise

testRecord

public static int testRecord(java.lang.String recName)

Checks if the given parameter is a PDB record name.

Parameters:

recName - a potential PDB record name

Returns:

SURE if it is surely a PDB line, CAN_BE if it can be a PDB line, NO otherwise