chemaxon.marvin.alignment
Enum AlignmentType

java.lang.Object
  java.lang.Enum<AlignmentType>
      chemaxon.marvin.alignment.AlignmentType

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<AlignmentType>

public enum AlignmentType
extends java.lang.Enum<AlignmentType>

Author:

adrian

Enum Constant Summary

CXN
Add a the ChemAxon potential between all possible atom pairs having the same force field atomtypes.

MCS
The 2D maximum common substructure is identified and constraints are added to the identical atoms.

PHARMACOPHORIC

USER_ONLY
Use only constraints added by the user

Method Summary

static AlignmentType	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static AlignmentType[]	values() Returns an array containing the constants of this enum type, in the order they're declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

USER_ONLY

public static final AlignmentType USER_ONLY

Use only constraints added by the user

MCS

public static final AlignmentType MCS

The 2D maximum common substructure is identified and constraints are added to the identical atoms. The non-MCS atoms are attempted to align using CXN potential.

CXN

public static final AlignmentType CXN

Add a the ChemAxon potential between all possible atom pairs having the same force field atomtypes. The CXN potential function has two regions : one for the distal and one for the close atom/atom distances.

PHARMACOPHORIC

public static final AlignmentType PHARMACOPHORIC

Method Detail

values

public static final AlignmentType[] values()

Returns an array containing the constants of this enum type, in the order they're declared. This method may be used to iterate over the constants as follows:

for(AlignmentType c : AlignmentType.values())
        System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they're declared

valueOf

public static AlignmentType valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name