chemaxon.struc.prop
Class MHCoords3DProp

java.lang.Object
  chemaxon.struc.MProp
      chemaxon.struc.prop.MHCoords3DProp

All Implemented Interfaces:

java.lang.Cloneable, MTransformable, java.io.Serializable

public class MHCoords3DProp

extends MProp

implements MTransformable

3D coordinates array property. These properties are "coordinate dependent" by default thus they become invalid when molecule coordinates are changed.

Since:

Marvin 4.1.3, 11/09/2006

Version:

5.0, 11/05/2007

Author:

Peter Csizmadia

See Also:

Serialized Form

Field Summary

Fields inherited from class chemaxon.struc.MProp

CONV_SELFREF, COORDDEP

Constructor Summary

MHCoords3DProp(java.util.Map map, MoleculeGraph m)
Constructs a property object from a map.

MHCoords3DProp(java.lang.String sval)
Constructs a point array property from a string value.

Method Summary

java.lang.Object	clone() Clones the object.
MProp	cloneProp() Clones the object.
java.lang.String	convertToString(java.lang.String fmt, int flags) Converts the property to text format.
java.util.Map	getMap(MoleculeGraph m) Gets a map containing MolAtom objects as keys and DPoint3 arrays as values.
DPoint3[]	getPoints(int k) Gets the Hydrogen locations for an atom.
java.lang.String	getPropType() Gets the type name of the property.
java.lang.Object	getPropValue() Gets the property value as an object.
java.lang.String	getPropXSDType() Gets the XSD type name of the property.
void	transform(CTransform3D t) Transforms the coordinates.

Methods inherited from class chemaxon.struc.MProp

convertToString, getGrinvCC, getPropArraySize, isCoordDependent, setCoordDependent, toString

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MHCoords3DProp

public MHCoords3DProp(java.util.Map map,
                      MoleculeGraph m)

Constructs a property object from a map.

Parameters:

map - map containing atoms as keys and DPoint3 arrays as values

m - the molecule graph

MHCoords3DProp

public MHCoords3DProp(java.lang.String sval)
               throws MolFormatException

Constructs a point array property from a string value.

Parameters:

sval - the string value

Method Detail

convertToString

public java.lang.String convertToString(java.lang.String fmt,
                                        int flags)

Converts the property to text format.

Specified by:

convertToString in class MProp

Parameters:

fmt - the molecule file format or null

flags - optional conversion flags

Returns:

the string

Since:

Marvin 4.1.7, 04/10/2007

See Also:

MProp.CONV_SELFREF

getPropValue

public java.lang.Object getPropValue()

Gets the property value as an object.

Specified by:

getPropValue in class MProp

Returns:

the Integer

getMap

public final java.util.Map getMap(MoleculeGraph m)

Gets a map containing MolAtom objects as keys and DPoint3 arrays as values.

Parameters:

m - molecule containing the atoms

Returns:

the map

getPoints

public final DPoint3[] getPoints(int k)

Gets the Hydrogen locations for an atom.

Parameters:

k - atom index

Returns:

the locations

getPropType

public java.lang.String getPropType()

Gets the type name of the property.

Specified by:

getPropType in class MProp

Returns:

"double"

getPropXSDType

public java.lang.String getPropXSDType()

Gets the XSD type name of the property.

Specified by:

getPropXSDType in class MProp

Returns:

"ENTITY"

cloneProp

public MProp cloneProp()

Clones the object.

Specified by:

cloneProp in class MProp

Returns:

the clone

clone

public java.lang.Object clone()

Clones the object.

Returns:

the clone

transform

public void transform(CTransform3D t)

Transforms the coordinates.

Specified by:

transform in interface MTransformable

Parameters:

t - the transformation matrix