|
|||||||||
| PREV NEXT | FRAMES NO FRAMES | ||||||||
| chemaxon.formats.* |
|---|
| chemaxon.formats.MFileFormat | ||
|---|---|---|
public static final long |
F_ARCHIVE |
128L |
public static final long |
F_BINARY |
8L |
public static final long |
F_COORDS |
1024L |
public static final long |
F_EXPORT |
1L |
public static final long |
F_GRAPHICS |
256L |
public static final long |
F_IMAGE |
512L |
public static final long |
F_IMPORT |
2L |
public static final long |
F_MIXED |
8192L |
public static final long |
F_MOLECULE |
32L |
public static final long |
F_MULTIPLE_RECORDS_LEGAL |
2048L |
public static final long |
F_MULTIPLE_RECORDS_POSSIBLE |
4096L |
public static final long |
F_OBJECT |
16L |
public static final long |
F_REACTION |
64L |
public static final long |
F_RECOGNIZER |
4L |
public static final long |
F_SINGLE_LINE |
65536L |
public static final long |
F_USER_DEFINED |
32768L |
public static final long |
F_XML |
16384L |
| chemaxon.formats.MFileFormatUtil | ||
|---|---|---|
public static final int |
MULTISET |
1 |
| chemaxon.formats.MolExporter | ||
|---|---|---|
public static final int |
C_CLOSE_STREAM |
1 |
public static final int |
C_FLUSH_STREAM |
2 |
| chemaxon.formats.MolImporter | ||
|---|---|---|
public static final int |
F_MOLMOVIE |
1 |
| chemaxon.formats.recognizer.AbbrevGroupRecognizer | ||
|---|---|---|
public static final int |
CAN_BE |
1 |
public static final int |
NO |
0 |
public static final int |
SURE |
2 |
| chemaxon.formats.recognizer.PDBRecognizer | ||
|---|---|---|
public static final int |
CAN_BE |
1 |
public static final int |
NO |
0 |
public static final int |
SURE |
2 |
| chemaxon.jep.* |
|---|
| chemaxon.jep.ChemJEP | ||
|---|---|---|
public static final int |
FALSE |
0 |
public static final int |
TRUE |
1 |
public static final int |
UNDECIDED |
2 |
| chemaxon.jep.Evaluator | ||
|---|---|---|
public static final java.lang.String |
CONFIG_DIR |
"config" |
public static final java.lang.String |
DEFAULT_TAG_NAME |
"CALC" |
public static final java.lang.String |
EVALUATOR_DEFAULTS_FILE |
"evaluator.xml" |
public static final java.lang.String |
EVALUATOR_NAMED_MOLS_FILE |
"mols.smarts" |
public static final java.lang.String |
EVALUATOR_SCRIPT_FILE |
"jep.script" |
| chemaxon.jep.context.SearchContext | ||
|---|---|---|
protected static final int |
MAXMAPS |
1024 |
| chemaxon.license.* |
|---|
| chemaxon.license.LicenseManager | ||
|---|---|---|
public static final java.lang.String |
CARTRIDGE |
"JChem Cartridge" |
public static final java.lang.String |
CHARGE_PLUGIN_GROUP |
"Charge Plugin Group" |
public static final java.lang.String |
CONFORMATION_PLUGIN_GROUP |
"Conformation Plugin Group" |
public static final java.lang.String |
FRAGMENTER |
"Fragmenter" |
public static final java.lang.String |
GEOMETRY_PLUGIN_GROUP |
"Geometry Plugin Group" |
public static final java.lang.String |
HBDA_PLUGIN |
"HBDA Plugin" |
public static final java.lang.String |
HUCKEL_ANALYSIS_PLUGIN |
"Huckel Analysis Plugin" |
public static final java.lang.String |
INSTANT_JCHEM |
"Instant JChem" |
public static final java.lang.String |
IQSAR |
"IQSAR" |
public static final java.lang.String |
ISOMERS_PLUGIN_GROUP |
"Isomers Plugin Group" |
public static final java.lang.String |
IUPAC_NAMING_PLUGIN |
"IUPAC Naming Plugin" |
public static final java.lang.String |
JCHEM |
"JChem Base" |
public static final java.lang.String |
JKLUSTOR |
"JKlustor" |
public static final java.lang.String |
MARKUSH_ENUM_PLUGIN |
"Markush Enumeration Plugin" |
public static final java.lang.String |
MARKUSH_SEARCH |
"Markush Search" |
public static final java.lang.String |
MARVIN_APPLETS |
"Marvin Applets" |
public static final java.lang.String |
MARVIN_BEANS |
"Marvin Beans" |
public static final java.lang.String |
METABOLIZER |
"Metabolizer" |
public static final java.lang.String |
PARTITIONING_PLUGIN_GROUP |
"Partitioning Plugin Group" |
public static final java.lang.String |
PROTONATION_PLUGIN_GROUP |
"Protonation Plugin Group" |
public static final java.lang.String |
QSAR |
"3D QSAR" |
public static final java.lang.String |
REACTOR |
"Reactor" |
public static final java.lang.String |
REFRACTIVITY_PLUGIN |
"Refractivity Plugin" |
public static final java.lang.String |
SCREEN |
"Screen" |
public static final java.lang.String |
SOLUBILITY_PLUGIN |
"Solubility Plugin" |
public static final java.lang.String |
STANDARDIZER |
"Standardizer" |
| chemaxon.marvin.* |
|---|
| chemaxon.marvin.VersionInfo | ||
|---|---|---|
public static final java.lang.String |
BUILD_DATE |
"2008-10-01" |
public static final boolean |
IS_DEV_VERSION |
true |
| chemaxon.marvin.beans.MSketchPane | ||
|---|---|---|
public static final int |
SM_ATOM |
2 |
public static final int |
SM_BOND |
3 |
public static final int |
SM_DELETE |
1 |
public static final int |
SM_FLAGS_OFF |
8 |
public static final int |
SM_MASK |
255 |
public static final int |
SM_SELECT |
0 |
| chemaxon.marvin.beans.MViewPane | ||
|---|---|---|
public static final int |
EDITABLE |
1 |
public static final int |
SKETCHABLE |
2 |
public static final int |
VIEW_ONLY |
0 |
| chemaxon.marvin.calculations.ConformerPlugin | ||
|---|---|---|
public static final int |
OPTIMIZATION_NORMAL |
1 |
public static final int |
OPTIMIZATION_STRICT |
2 |
public static final int |
OPTIMIZATION_VERY_LOOSE |
0 |
public static final int |
OPTIMIZATION_VERY_STRICT |
3 |
| chemaxon.marvin.calculations.HBDAPlugin | ||
|---|---|---|
public static final java.lang.String |
ACCEPTOR_SIGN |
"A" |
public static final java.lang.String |
DONOR_SIGN |
"D" |
public static final double |
EPSILON |
0.1 |
| chemaxon.marvin.calculations.IsoelectricPointPlugin | ||
|---|---|---|
public static final java.lang.String |
TYPE_DISTR |
"chargedistr" |
| chemaxon.marvin.calculations.MarkushEnumerationPlugin | ||
|---|---|---|
public static final int |
COLORING_ALL |
3 |
public static final int |
COLORING_NONE |
0 |
public static final int |
COLORING_RGROUPS |
2 |
public static final int |
COLORING_SCAFFOLD |
1 |
| chemaxon.marvin.calculations.MSAPlugin | ||
|---|---|---|
public static final int |
SOLVENT |
1 |
public static final int |
VAN_DER_WAALS |
0 |
| chemaxon.marvin.calculations.pKaPlugin | ||
|---|---|---|
public static final int |
ACIDIC |
-1 |
public static final int |
BASIC |
1 |
public static final int |
DEF_MAXIONS |
8 |
public static final double |
DEF_TEMPERATURE |
298.0 |
public static final int |
DYNAMICpKaPREFIX |
2 |
public static final int |
MODEL_LARGE |
1 |
public static final int |
MODEL_SMALL |
0 |
public static final int |
STATICpKaPREFIX |
1 |
public static final java.lang.String |
TYPE_DISTR |
"msdistr" |
| chemaxon.marvin.calculations.StereoisomerPlugin | ||
|---|---|---|
public static final int |
BOTH |
3 |
public static final int |
DOUBLE_BOND |
2 |
public static final int |
TETRAHEDRAL |
1 |
| chemaxon.marvin.common.UserSettings | ||
|---|---|---|
public static final boolean |
DEFAULT_BOND_IN_HAND |
true |
public static final boolean |
DEFAULT_LONE_PAIR_AUTOCALC |
true |
public static final double |
DEFAULT_SKETCH_ARROW_HEAD_LENGTH |
0.8 |
public static final double |
DEFAULT_SKETCH_ARROW_HEAD_WIDTH |
0.5 |
public static final int |
DEFAULT_SKETCH_RECENT_FILE_LIST_SIZE |
4 |
public static final int |
DEFAULT_VIEW_RECENT_FILE_LIST_SIZE |
4 |
public static final int |
MAX_SKETCH_RECENT_FILE_LIST_SIZE |
10 |
public static final int |
MAX_VIEW_RECENT_FILE_LIST_SIZE |
10 |
public static final int |
MIN_SKETCH_RECENT_FILE_LIST_SIZE |
1 |
public static final int |
MIN_VIEW_RECENT_FILE_LIST_SIZE |
1 |
public static final int |
MYTEMPLATES_GROUP_INDEX |
128 |
| chemaxon.marvin.io.MRecord | ||
|---|---|---|
public static final int |
F_MOL_MISSING |
1 |
| chemaxon.marvin.modules.AutoMapper | ||
|---|---|---|
public static final int |
BEST |
3 |
public static final int |
CHANGING |
4 |
public static final int |
CHEMAXON |
4 |
public static final int |
COMPLETE |
2 |
public static final int |
DAYLIGHT |
3 |
public static final double |
DEFAULT_COMPLEXITY_THRESHOLD |
1.0E30 |
public static final int |
DEFAULT_MAPPING_STRATEGY |
2 |
public static final int |
DEFAULT_MAPPING_STYLE |
4 |
public static final long |
DEFAULT_STEP_LIMIT |
20000L |
public static final int |
EITHER |
18 |
public static final int |
FASTEST |
1 |
public static final int |
MATCHING |
3 |
public static final int |
ORPHANS |
1 |
public static final int |
STANDARD |
2 |
public static final int |
STOP_BADARGSINMODFUNC |
6 |
public static final int |
STOP_FOUND |
2 |
public static final int |
STOP_NOTFOUND |
4 |
public static final int |
STOP_STEPLIMIT |
3 |
public static final int |
STOP_TIMELIMIT |
5 |
public static final int |
STOP_UNKONW |
1 |
public static final int |
UNKNOWN |
16 |
public static final int |
UNMAPPED |
17 |
| chemaxon.marvin.modules.MacroMolecule.NucleicAcid.BackboneAtomIterator | ||
|---|---|---|
public static final int |
SECONDARY_NUCLEIC |
4 |
| chemaxon.marvin.modules.MacroMolecule.Protein.AtomIterator | ||
|---|---|---|
public static final int |
SECONDARY_HELIX |
2 |
public static final int |
SECONDARY_SHEET |
3 |
public static final int |
SECONDARY_TURN |
1 |
| chemaxon.marvin.modules.MacroMolecule.Protein.Helix | ||
|---|---|---|
public static final int |
ALPHA |
16 |
public static final int |
GAMMA |
128 |
public static final int |
H310 |
256 |
public static final int |
LEFT_HANDED |
2 |
public static final int |
OMEGA |
32 |
public static final int |
PI |
64 |
public static final int |
POLYPROLINE |
1024 |
public static final int |
RIBBON27 |
512 |
public static final int |
RIGHT_HANDED |
1 |
| chemaxon.marvin.modules.MacroMolecule.Protein.Sheet | ||
|---|---|---|
public static final int |
ANTIPARALLEL |
4 |
public static final int |
FIRST |
1 |
public static final int |
PARALLEL |
2 |
| chemaxon.marvin.modules.MoleculeIterators.AtomIteratorInterface | ||
|---|---|---|
public static final int |
SECONDARY_NONE |
0 |
| chemaxon.marvin.modules.MoleculeIterators.BondIteratorInterface | ||
|---|---|---|
public static final int |
ATOM1 |
1 |
public static final int |
ATOM2 |
2 |
public static final int |
NEIGHBOR |
0 |
| chemaxon.marvin.modules.PDBReader | ||
|---|---|---|
public static final int |
ADD_LP |
32 |
public static final int |
HYDROGENIZE_ALL |
3 |
public static final int |
HYDROGENIZE_LIGAND |
1 |
public static final int |
HYDROGENIZE_NO |
0 |
public static final int |
HYDROGENIZE_OPT |
7 |
public static final int |
HYDROGENIZE_REMOVE |
16 |
| chemaxon.marvin.paint.DispOptConsts | ||
|---|---|---|
public static final int |
ABS_FLAG |
33554432 |
public static final int |
ANYBOND_AUTO |
0 |
public static final java.lang.String |
ANYBOND_AUTO_S |
"auto" |
public static final int |
ANYBOND_DASHED |
2097152 |
public static final java.lang.String |
ANYBOND_DASHED_S |
"dashed" |
public static final int |
ANYBOND_MASK |
6291456 |
public static final int |
ANYBOND_OFFSET |
21 |
public static final int |
ANYBOND_SOLID |
4194304 |
public static final java.lang.String |
ANYBOND_SOLID_S |
"solid" |
public static final int |
ATMAP_FLAG |
4096 |
public static final int |
ATNUM_FLAG |
2048 |
public static final int |
ATSYM_FLAG |
1024 |
public static final int |
BALLSTICK |
393216 |
public static final java.lang.String |
BALLSTICK_RENDERING_S |
"ballstick" |
public static final int |
BONDLEN_FLAG |
8192 |
public static final int |
CARBON_VIS_INCHAIN |
268435456 |
public static final java.lang.String |
CARBON_VIS_INCHAIN_S |
"inChain" |
public static final int |
CARBON_VIS_MASK |
805306368 |
public static final int |
CARBON_VIS_OFF |
0 |
public static final java.lang.String |
CARBON_VIS_OFF_S |
"off" |
public static final int |
CARBON_VIS_OFFSET |
28 |
public static final int |
CARBON_VIS_ON |
536870912 |
public static final java.lang.String |
CARBON_VIS_ON_S |
"on" |
public static final int |
COLORS_MASK |
192 |
public static final int |
COLORS_OFFSET |
6 |
public static final int |
CPK_SCHEME |
64 |
public static final java.lang.String |
CPK_SCHEME_S |
"cpk" |
public static final int |
DAYLIGHT_DOWNWEDGE_FLAG |
1048576 |
public static final java.lang.String |
DAYLIGHT_DOWNWEDGE_S |
"daylight" |
public static final int |
DOWNWEDGE_OFFSET |
20 |
public static final int |
EXPLICITH_FLAG |
4 |
public static final int |
EZ_FLAG |
65536 |
public static final int |
GRINV_FLAG |
512 |
public static final int |
GROUP_SCHEME |
192 |
public static final java.lang.String |
GROUP_SCHEME_S |
"group" |
public static final int |
IMPLICITH_ALL |
3 |
public static final java.lang.String |
IMPLICITH_ALL_S |
"all" |
public static final int |
IMPLICITH_HETERO |
1 |
public static final java.lang.String |
IMPLICITH_HETERO_S |
"hetero" |
public static final int |
IMPLICITH_HETEROTERM |
2 |
public static final java.lang.String |
IMPLICITH_HETEROTERM_S |
"heteroterm" |
public static final int |
IMPLICITH_MASK |
3 |
public static final int |
IMPLICITH_OFF |
0 |
public static final java.lang.String |
IMPLICITH_OFF_S |
"off" |
public static final int |
LP_AUTO_FLAG |
134217728 |
public static final int |
LP_FLAG |
16777216 |
public static final java.lang.String |
MDL_DOWNWEDGE_S |
"mdl" |
public static final int |
MM_MASK |
56 |
public static final int |
MM_OFFSET |
3 |
public static final int |
MM_ROT3D |
24 |
public static final int |
MM_ROTZ |
16 |
public static final int |
MM_ZOOM |
8 |
public static final int |
MM_ZOOMROT |
32 |
public static final int |
MONO_SCHEME |
0 |
public static final java.lang.String |
MONO_SCHEME_S |
"mono" |
public static final int |
QUALITY_MASK |
8388608 |
public static final int |
QUALITY_OFFSET |
23 |
public static final int |
RENDERING_MASK |
917504 |
public static final int |
RENDERING_OFFSET |
17 |
public static final int |
RGROUPS_FLAG |
67108864 |
public static final int |
RS_ALL |
32768 |
public static final java.lang.String |
RS_ALL_S |
"all" |
public static final int |
RS_MASK |
49152 |
public static final int |
RS_OFF |
0 |
public static final java.lang.String |
RS_OFF_S |
"off" |
public static final int |
RS_OFFSET |
14 |
public static final int |
RS_SELECTED |
16384 |
public static final java.lang.String |
RS_SELECTED_S |
"selected" |
public static final int |
SET_SCHEME_FLAG |
256 |
public static final int |
SHAPELY_SCHEME |
128 |
public static final java.lang.String |
SHAPELY_SCHEME_S |
"shapely" |
public static final int |
SPACEFILL |
524288 |
public static final java.lang.String |
SPACEFILL_RENDERING_S |
"spacefill" |
public static final int |
STICKS |
262144 |
public static final java.lang.String |
STICKS_RENDERING_S |
"sticks" |
public static final int |
WIREFRAME |
0 |
public static final java.lang.String |
WIREFRAME_RENDERING_S |
"wireframe" |
public static final int |
WIREKNOBS |
131072 |
public static final java.lang.String |
WIREKNOBS_RENDERING_S |
"wireknobs" |
| chemaxon.marvin.plugin.CalculatorPlugin | ||
|---|---|---|
public static final int |
ATOM |
1 |
public static final int |
BLUE |
255 |
protected static final int |
CALCRGB_OFF |
32 |
protected static final java.lang.String |
COVALENT_HYDRATION_ERROR_REMARK |
"Covalent hydration occurred." |
protected static final java.lang.String |
CRITICAL_ERROR_MSG |
"Inconsistent molecular structure." |
public static final double |
EPSILON |
0.1 |
protected static final java.lang.String |
INCORRECT_AROMATIC_NITROGEN_REMARK |
"Aromatic nitrogen is not specified correctly." |
protected static final java.lang.String |
INSTABLE_TAUTOMERIC_FORM_REMARK |
"Instable tautomeric form." |
public static final int |
MOLECULE |
2 |
public static final java.lang.String |
PLUGIN_CLASS_KEY |
"Plugin-Class" |
public static final java.lang.String |
PLUGIN_DIR |
"/xjars" |
public static final int |
RED |
16711680 |
| chemaxon.marvin.plugin.CalculatorPluginDisplay | ||
|---|---|---|
protected static final int |
CELLSIZE |
380 |
protected static final int |
HTML |
3 |
protected static final int |
LABEL |
1 |
protected static final int |
MAX_LINE_LENGTH |
50 |
protected static final int |
NONE |
0 |
protected static final int |
TEXT |
2 |
protected static final java.lang.String |
WORD_SEPARATORS |
"- " |
| chemaxon.marvin.plugin.PluginFactory | ||
|---|---|---|
public static final java.lang.String |
DEFAULT_CONFIG_FILE |
"plugins.properties" |
public static final java.lang.String |
NOPARAMS |
"NOPARAMS" |
public static final java.lang.String |
PRELOAD |
"PRELOAD" |
| chemaxon.marvin.space.GraphicCell | ||
|---|---|---|
protected static final int |
ACCUM_NUMBER |
5 |
protected static final int |
DEFAULT_CAMERA_Z |
30 |
protected static final float |
DEFAULT_FAR_CLIP |
450.0f |
protected static final float |
DEFAULT_FOVY |
15.0f |
protected static final float |
DEFAULT_NEAR_CLIP |
0.10000000149011612f |
protected static final int |
DEFAULT_NEAR_EDGE |
30 |
protected static final int |
MAX_NUMBER_OF_COMPONENTS_PER_CELL |
256 |
protected static final int |
MODE_NORMAL |
1 |
protected static final int |
MODE_PICK |
2 |
| chemaxon.marvin.space.GraphicComponent | ||
|---|---|---|
protected static final int |
COMPONENT_TYPE_ENTIRE |
1 |
public static final int |
RENDERING_QUALITY_HIGH |
3 |
public static final int |
RENDERING_QUALITY_LOW |
1 |
public static final int |
RENDERING_QUALITY_MEDIUM |
2 |
| chemaxon.marvin.space.GraphicScene | ||
|---|---|---|
public static final int |
CELL_RANGE |
2 |
public static final int |
COMPONENT_RANGE |
3 |
public static final int |
MODE_MOVING |
2 |
public static final int |
MODE_STANDING |
1 |
public static final int |
SCENE_RANGE |
1 |
public static final int |
VERBOSE_LEVEL_BASIC |
1 |
public static final int |
VERBOSE_LEVEL_DEVEL |
2 |
public static final int |
VERBOSE_LEVEL_NONE |
0 |
| chemaxon.marvin.space.MacroMoleculeComponent | ||
|---|---|---|
public static final int |
B_FACTOR_MODE |
12 |
protected static final int |
COMPONENT_TYPE_ATOM |
2 |
protected static final int |
COMPONENT_TYPE_BOND |
3 |
protected static final int |
COMPONENT_TYPE_MOLECULE |
4 |
protected static final int |
COMPONENT_TYPE_RESIDUE |
5 |
public static final int |
RAINBOW_MODE |
11 |
| chemaxon.marvin.space.MolecularSurfaceComponent | ||
|---|---|---|
protected static final boolean |
AUTO_RESOLUTION_ENABLED |
true |
public static final float |
DEFAULT_ISOVALUE |
0.017999999225139618f |
public static final float |
DEFAULT_PROBE_RADIUS |
1.399999976158142f |
public static final float |
DEFAULT_RESOLUTION |
0.550000011920929f |
public static final int |
SURFACE_COLOR_GRID_MAPPING |
7 |
public static final int |
SURFACE_COLOR_ | |