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Fragmenter uses RECAP and other methods to create building blocks by fragmenting larger molecules. Fragmenter is particularly relevant for generating analogues of biologically active compounds for lead discovery and for decomposing compounds to identify central structures.
Fragmenter also allows R-group decomposition of combinatorial libraries to determine substituents of a common scaffold
To determine the key fragments responsible for high or low activity of an active compound family fragment statistics can be generated to identify the structure activity relationship