Standardizer is a structure canonicalization tool in JChem for converting molecules
from different sources into standard representational forms.
Standardizer can automate the identification of mesomers and tautomers and can
be used for counter-ion removal.
Flexible molecule transformation engine;
- hydrogen manipulations
- aromatic bond transformations
- mesomers
- tautomers
- template based cleaning
- counter ion and solvent removal (by size, counter ion list)
- generation of 2D and 3D coordinates
- set or remove chiral flag, remove stereo features
- enumerate stoichiometry constants
- user defined canonicalization rules
Related links
Feature Animations