Installation Guide for Instant JChem « ChemAxon - toolkits and desktop applications for cheminformatics

Installation Guide for Instant JChem

After downloading, double-click on instantjchem-VERSION-windows.exe to start the installer. Instant JChem will be wrapped out into the selected directory.

Instant JChem uses its own Java (that it is bundled in the installer). If you want to use another Java, see How to change IJC’s Java.
Vista users who updates from 2.3.1 to 2.4: After installation of new IJC, starting of new IJC application may try to run still the old version. That is the side effect of Virtual File System of Vista. Vista protects the writting of the Program Files folder from normal users. Unless you access it in administrator mode, those files that are copied into “Program Files”, will not be stored there. Instead of that, they are saved in your home directory. Despite of it, your application can see these files in the “Program Files” folder. By upgrade, the situation is similar. If installers are run in administrator mode but update modules launched from IJC application (in non-administrator mode), two different users writes the same folder. If you would like to remove this IJC version, installer can removes only those files that arelocated into the directory that it created.
The workaround: Delete the following directory:
```
<HOME>\AppData\Local\VirtualStore\<INSTANTJCHEMPATH>
```
where <HOME> is your home directory and <INSTANTJCHEMPATH> is the relative path of the codebase (e.g.: C:\Users\myaccount\AppData\Local\VirtualStore\Program Files\ChemAxon\InstantJChem).

After downloading, double-click instantjchem-VERSION-macos.dmg to expand disk image.
In the extracted image, you will find the installer that you can launch by taking a double-click on it.
The Instant JChem application will be placed into the specified place. (Its default place is the /Applications directory.)

IJC requires 1.5 (or later) version of OS X Java. Java 1.5 is available since OS X 10.4. (Earlier OS X versions are not supported.) If the required Java is not installed, select it from the operating system’s Update Center to install.

After downloading, open a shell and cd to the directory where you have downloaded the installer.
At the prompt, type: sh instantjchem-VERSION-linux.sh
After the installation, add the bin subdirectory of the Instant JChem directory to the PATH to be able to run IJC from any directory.

Instant JChem uses its own Java (that it is bundled in the installer). If you want to use another Java, see How to change IJC’s Java.

After downloading, enter into the directory where you have saved instantjchem-VERSION.zip then uncompress the zip file.
Gives the home directory of your Java by editing instantjchem/etc/instantjchem.conf. (See Howto change IJC’s Java.)
You can start applications by script, which you can find in the instantjchem/bin directory.

Requires Sun’s Java 1.5 (or later). You can download it from Sun’s Java web site or contact your OS manufacturer.
You need an expander which can handle zip extension.

Use the uninstaller to remove Instant JChem from your machine.

Double click on uninstall.exe in the Instant JChem’s home folder
Select Instant JChem from the Add / Remove programs list on Control Panel.
Select “Instant JChem’s uninstaller” from the “ChemAxon/Instant JChem” menu from the Programs menu (which you can access by pressing the “Start” button on the toolbar).

Drag the icon of Instant JChem into Trash.

Launch the uninstall script in the Instant JChem’s home directory.

Edit etc/instantjchem.conf in the Instant JChem’s directory. Append the following line to the end of the file:

jdkhome=<JAVAHOME>

where <JAVAHOME> is the absolute path of the home directory of the new Java. E.g.:

jdkhome=/usr/java/jdk1.5.0_10

Any other lines that starts with jdkhome= has to be taken into comment (by placing a # character on the begining of the line.