UGM Budapest 2012
Where and when? - ChemAxon's 8th European User Group Meeting will be held on Tuesday and Wednesday, May 22nd-23rd, at the Hotel Novotel Budapest Centrum.
Monday, 21st May afternoon - Markush Forum, a meeting for those who are interested in the development of ChemAxon’s Markush technology and the available content.
Tuesday & Wednesday, 22nd-23rd May - The UGM will include presentations from ChemAxon users, partners and developers with opportunity to network with peers and meet with developers.
Thursday, 24th May - Following the UGM program we host the training day that consists of two parallel tracks. The developers' training deals with technical issues, the Application focus training introduces ChemAxon products to end users.
Plenty of opportunities for networking
Speaking to peers and colleagues in addition to the lunches and breaks we have organized social programs to keep the ideas flowing.
Sunday: Informal gathering in the hotel's bar.
Monday: 1-2-1 sessions and garden party at the new office
Tuesday: Gala Dinner with Hungarian wine and cheese tasting in the old monastery building of the Museum Kiscell.
Wednesday: Informal chat and nibbles in the Szimpla Kert.
Monday May 21st afternoon, preceding the UGM. The Markush Forum provides an opportunity for content users to be updated and shape the further development of ChemAxon’s Markush search and enumeration tools for IP and research.More about the Markush Forum
Thursday May 24th, the UGM will be followed by a dedicated Training day with two parallel tracks: for developers and for end users. The main goal of our technical training is to introduce the new product features and give answers to the questions of how ChemAxon tools can be best integrated in various cheminformatics applications.More about the developer training
Application focus training
Thursday May 24th, the UGM will be followed by a dedicated Training day with two parallel tracks: for developers and for end users. The aim of our Application focus training is to give end users and those new to ChemAxon a handle on basic ChemAxon functionality and how you can interact with it.More about the application focus training
One to one session
Before our Garden party at the office we have a 1-2-1 session where our users can meet with ChemAxon staff to discuss scientific, technical or business issues. Each major product group will have a discussion area where ChemAxon experts will be on call.
For more details on the topics of the 1-2-1 session please check back later.
ChemAxon Partner participation
ChemAxon technology isn't just available from ChemAxon. On Tuesday May 22nd we hold a Partners' lightning round session highlighting how our technologies compliment the products and services of our Partners.
Partners' table-top exhibition: Throughout Tuesday and Wednesday, partners will be available at exhibition sessions where attendees can meet and find out more about partner products and services.
For more details on partners' participation please contact Nóra Lapusnyik.
If you have any questions, comments or requirements about the ChemAxon UGM feel free to contact János Fejérvári.
The cost of the 2 day User Group Meeting is $500 for corporate attendees and $250 for academics.
For the training day (either/both tracks) the costs are $550 for corporate attendees and $275 for academics. Training attendees can attend either track. The fee for the training day does not include the user group meeting fee.
The cost includes all breaks, lunches and the social programs.
We look forward to welcoming you in May.
The Hotel Novotel Centrum Budapest will host our UGM in Budapest. Note that the hotel tends to fill quickly so reserve accommodation early. Book your room online now by visiting this page.
Note that besides the ChemAxon conference rate you will find cheaper offers too from the Novotel. The reason is that our conference price includes breakfast and cancellation fee (you can cancel your booking 10 days prior arrival), while the other prices do not. You can decide not to have these options included into your room reservation, and book your accommodation on your own.
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May 21st, informal lunch at 12:30 pm in the restaurant of the event hotel, session between 1:00 pm - 5:00 pm.
ChemAxon and Thomson Reuters have formed a partnership to enable storage, search and enumeration of Markush DARC format (VMN), which is used in Thomson Reuters’ Merged Markush Service database - interlinked with DWPI (Derwent World Patent Index) and DCR (Derwent Chemistry Resource).
The Markush Forum provides an opportunity for members of ChemAxon's Markush forum to meet and discuss developments and future directions with ChemAxon Markush search and enumeration technology working on Thomson Reuters MMS content.
Agenda of the Forum:
- 01:00 pm - 01:10 pm Welcome - Steve Hajkowski & Szabolcs Csepregi
- 01:10 pm - 01:20 pm Introducing the data: patent and structure data overview (DWPI, DCR + MMS) - Steve Hajkowski (Thomson Reuters)
- 01:20 pm - 01:50 pm Current Markush functionality overview - David (Wei) Deng (ChemAxon)
- 01:50 pm - 02:25 pm Instant JChem & Markush enumeration product demo - Krisztián Niesz (ChemAxon)
- 02:25 pm - 02:40 pm How this can be used? - Selected use cases - Szabolcs Csepregi (ChemAxon)
- 02:40 pm - 02:55 pm Break
- 02:55 pm - 03:25 pm Indexing complex Markush structures in Patents - Brian Larner (Thomson Reuters)
- 03:25 pm - 03:40 pm What is new in the Markush project? - Szabolcs Csepregi
- 03:40 pm - 03:55 pm Summary of previous Markush forum outcomes - Szabolcs Csepregi
- 03:55 pm - 05:00 pm Discussion of planned future developments, prioritization - Szabolcs Csepregi
- 05:00 pm End of the Markush Forum
Who should attend?
Information Managers, Patent information Specialists, Research Managers concerned with investigation of patent space, Patent Attorneys, Business Intelligence Analysts.
May 24th, approximately between 9:00 am - 5:30 pm in the event hotel. Runs concurrently with the Application Focus training day track.
The main goal of our technical training is to introduce the new product features and give answers to the questions of how ChemAxon tools can be best integrated in various cheminformatics applications
The training program will involve common problems, different concepts, the ChemAxon's Application Programming Interface (API) and examples to understand how to integrate ChemAxon’s components in discovery pipelines and custom applications. Common problems ranging from basic to more complex scenarios will be explored and solved by Marvin/JChem developers with interactive demonstrations.
appr. 8:50 am - 12:30 pm - Introduction into ChemAxon's Marvin Suite
- 8:50 am - Opening Remarks - Miklós Vargyas
- 9:00 am - Structure representation, structure i/o, building molecules - János Kendi
- 10:00 am - Introduction to Marvin - István Fajth, Tamás Vertse
- 11:00 am - REFRESHMENT BREAK
- 11:30 am - Calculator plugin integration - Zsolt Mohácsi
- 12:00 pm - Custom Structure Checker implementation - István Rábel
- 12:30 pm - LUNCH
appr. 1:30 pm - 5:30 pm - Introduction into ChemAxon's JChem Suite
- 1:30 pm - Chemical database concepts, an introduction to JChem Base - Adrián Kalászi, Tamás Csizmazia
- 2:30 pm - REFRESHMENT BREAK
- 2:45 pm - Chemical database programming, examples of JChem Base API - Nóra Máté, Péter Kovács, Róbert Wagner
- 3:45 pm - REFRESHMENT BREAK
- 4:00 pm - Instant JChem - Tim Dudgeon, Petr Hammernik, Erin Bolstad
- 5:30 PM - Closing remarks
101 FAQ's to be answered:Structure Representation:
- How to build molecule from API?
- How are molecules with R-groups, S-groups represented?
- How to read and write features and molecules in various file formats (SDF, Marvin document file, CxSmiles...)?
- What are the components of a reaction?
- Marvin Applets and Beans - what is under the hood?
- How MarvinView and MarvinSketch can be embedded in an HTML page?
- How to fine tune the applet, to achieve the best available performance?
- How to embed Marvin in Swing based Java applications?
- How Marvin can be customized in client applications: how to customize the GUI, how to customize structure display, how to customize the editing?
- How does image import and export work in Marvin, which facilities can be used to create export options based on GUI or based on predefined display settings?
- How to customize templates and abbreviated groups in Marvin?
- How to change the structure while transferring between the viewer and editor?
- What tools does the Marvin library provide for other specific tasks?
- Where and how to find valuable information about the various settings and the wide range of tools can be used from Marvin Beans library?
- How external calculations can be integrated into ChemAxon products?
- How to implement a simple calculation in Java, and use it in MarvinSketch, cxcalc, and IJC?
- How to access web services from MarvinSketch, cxcalc, and IJC?
- How to implement new checkers and fixers for Structure Checker?
- How custom checkers and fixers can be integrated into ChemAxon applications?
- How are structures stored in the JChem database?
- How to search for molecular structures in chemical databases and how to sort hit lists?
- What are the best approaches to visualize search hits?
- How substructure search is sped up with the use of hashed chemical fingerprints?
- How to handle tautomers?
- How to standardize structures during compound registration and in hit visualization?
- How does the API relate to IJC’s two layers of functionality (DDL and DML)?
- How does one add a new entity or field via scripting?
- How does one import and export files, and add fields/properties to exported files?
- What data manipulation can be done via SQL, and what must be done via IJC in order to keep registries intact?
- How do you implement other tools from the script level (eg Standardizer)?
Application focus training
May 24th, approximately 9:00 am - 5:30 pm in the event hotel. Runs concurrently with Developer Training Day track
Application focus training is designed mainly for end users (chemists and biologists) and those new to ChemAxon, to get a handle on basic functionality and how you can interact with it. The morning session introduces key technologies and features, it introduces ChemAxon technology in general. The entire afternoon session is dedicated for hands-on training and workshops for advanced and new users too. For more details see the agenda below.
Since the training will have hands-on part you will need to bring your own laptop or let us know if you want to get a loaner for the training day. Also you will need to download and install the recommended software and licenses to your desktop (for the exact details please re-visit this page later). All attendees will get a free license valid for all ChemAxon products. The session starts at 9.00 am but we will be helping attendees set up their machines from 8 am.
Introduction to ChemAxon technologies with Marvin and JChem for Excel hands on training
The first presentation of this lecture session is designed to introduce beginners or new users to the general capabilities of ChemAxon technologies, focusing on the most commonly used visualization techniques, chemical representations, property predictions, chemical databases and chemical database clients. It is also useful for current users who have not had the advantage of a structured introduction to the general functional expectations of ChemAxon technologies. After the general introduction of our product line we'll have two parallel hands-on training tracks on Marvin Suite and on JChem for Excel.
This lecture explains the usage of ChemAxon’s core technology. The lecture will discuss the chemical structure handling and basic technology from an end uses point of view. The lecture will also explain the various product categories and dependencies.
Basic, advanced features and latest improvements of Marvin are covered.
The hands on session will provide working exaples for basic and advanced usage of JChem for Excel capabilities.
Advanced usage of ChemAxon technology
This workshop session is designed to continue to elaborate the morning session and provides hands-on experience for not only advanced users but beginners. Moreover, the workshops allow attendees to discuss and find solutions for their specific problems.
Topics such as database management, hierarchical tables, form view design, standardization, structure searching, Markush structure searching, Groovy scripting are covered.
Reaction enumeration by Reactor will also be discussed.