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Tautomer NPE
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TobiasKind

Joined: 26 Jan 2005
Posts: 561

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Link to postPosted: Sat Aug 16, 2008 3:49 amPost subject: Tautomer NPE Reply with quote

Hi,
same molecule from my previous molecule this time with arsenic.
Marvin 5.1 tautomer generation
O=C1OC2=C(C=C1)C=C(C=C2)[As](=O)=O

Greetings to Daniel, the name plugin works still like charm
6-arsochromen-2-one

Code:

java.lang.NullPointerException
        at java.lang.Class.forName0(Native Method)
        at java.lang.Class.forName(Unknown Source)
        at chemaxon.marvin.uif.action.manager.ActionManager$Entry.getAction(ActionManager.java:309)
        at chemaxon.marvin.uif.action.manager.ActionManager$Entry.access$300(ActionManager.java:285)
        at chemaxon.marvin.uif.action.manager.ActionManager.getAction(ActionManager.java:193)
        at chemaxon.marvin.common.swing.modules.EditMolfileFrame.init(EditMolfileFrame.java:294)
        at chemaxon.marvin.common.swing.modules.EditMolfileFrame.callback(EditMolfileFrame.java:211)
        at chemaxon.marvin.common.swing.MolPanel.editSource(MolPanel.java:3764)
        at chemaxon.marvin.common.swing.MolPanel.editSource(MolPanel.java:3753)
        at chemaxon.marvin.view.swing.ViewPanel.doSource(ViewPanel.java:591)
        at chemaxon.marvin.common.swing.action.SourceAction.doAction(SourceAction.java:34)
        at chemaxon.marvin.swing.MAction.actionPerformed(MAction.java:236)
        at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
        at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
        at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
        at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
        at javax.swing.AbstractButton.doClick(Unknown Source)
        at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
        at javax.swing.plaf.basic.BasicMenuItemUI$Handler.menuDragMouseReleased(Unknown Source)
        at javax.swing.JMenuItem.fireMenuDragMouseReleased(Unknown Source)
        at javax.swing.JMenuItem.processMenuDragMouseEvent(Unknown Source)
        at javax.swing.JMenuItem.processMouseEvent(Unknown Source)
        at javax.swing.MenuSelectionManager.processMouseEvent(Unknown Source)
        at javax.swing.plaf.basic.BasicPopupMenuUI$MouseGrabber.eventDispatched(Unknown Source)
        at java.awt.Toolkit$SelectiveAWTEventListener.eventDispatched(Unknown Source)
        at java.awt.Toolkit$ToolkitEventMulticaster.eventDispatched(Unknown Source)
        at java.awt.Toolkit$ToolkitEventMulticaster.eventDispatched(Unknown Source)
        at java.awt.Toolkit$ToolkitEventMulticaster.eventDispatched(Unknown Source)
        at java.awt.Toolkit.notifyAWTEventListeners(Unknown Source)
        at java.awt.Component.dispatchEventImpl(Unknown Source)
        at java.awt.Container.dispatchEventImpl(Unknown Source)
        at java.awt.Component.dispatchEvent(Unknown Source)
        at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
        at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
        at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
        at java.awt.Container.dispatchEventImpl(Unknown Source)
        at java.awt.Window.dispatchEventImpl(Unknown Source)
        at java.awt.Component.dispatchEvent(Unknown Source)
        at java.awt.EventQueue.dispatchEvent(Unknown Source)
        at java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown Source)
        at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
        at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
        at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
        at java.awt.EventDispatchThread.run(Unknown Source)



EDIT: The error was real, but I could not reproduce it, what i did
was replacing the N with As and vice versa.
Tobias
Gyuri
ChemAxon personnel
Joined: 21 May 2004
Posts: 1127

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Link to postPosted: Mon Aug 18, 2008 2:07 pmPost subject: Reply with quote

Thank you for reporting this issue, we are still investigating it, and will answer soon.
Gyuri
ChemAxon personnel
Joined: 21 May 2004
Posts: 1127

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Link to postPosted: Tue Aug 19, 2008 7:53 pmPost subject: Reply with quote

The bug has been corrected in version 5.1.1. Thank you again for reporting it.
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