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Extracting and connecting chemical structures from text sources using chemicalize.org
Apr 23, 2013 - PublicationBackground
Exploring bioactive chemistry requires navigating between structures and data from a variety of text-based sources. While PubChem currently includes approximately 16 million do…
Chemicalize.org, SureChemOpen, PubChem and the InChIKey: A heavenly conjunction with transformative utility
May 29, 2013 - PresentationThe ChemAxon Name to Structure functionality is not only a component of the SureChem patent extraction pipeline but also powers chemicalize.org. Both operations are now submitting source…
Synergies between ChemAxon's chemicalize and other open resources to extract structures from patents, discern SAR, and find intersects or similarities in PubChem.
May 23, 2012 - PresentationEvaluation of chemicalize.org indicates it not only complements and benchmarks commercial patent databases but also for academic groups interested in interrogating only small sections of …
Naming and chemicalize.org
Sep 15, 2010 - PresentationWe will present improvements in our name to structure and structure to name tools. We also demonstrate the extraction of chemical structure from their names occurring in text documents, w…
Extracting Chemical Information within Documents - from Desktop to Enterprise
Sep 25, 2013 - PresentationBy providing reliable name to structure conversion, Naming has become the backbone of ChemAxon’s chemical text mining tools, such as Document to Structure, JChem for SharePoint and …
Crowdsourcing New Chemical Entities: Development of a Submission Interface to Assess Relevance for Open Innovation Projects
May 28, 2013 - PosterWhile outsourcing discovery research is a well-established process, crowdsourcing in a discovery research environment is a much newer approach. The authors report on the development of an…
Supporting Open Innovation with Novel Software Solutions
Nov 14, 2012 - PosterAs pharma companies find themselves in an increasingly tight corner regarding pharmageddon less and less money is available for primary research. This has led to the rapid rise of Open In…
IUPAC Naming and chemicalize.org
Sep 16, 2009 - PresentationA very large number of webpages, patents, text, office and PDF documents contain chemical names, which constitute valuable information. However, since the names are mixed in the text, wit…
Demonstration of Naming Technology, Document to Structure and Chemicalize.org
May 23, 2012 - PresentationChemAxon’s Naming Technology supports IUPAC and common name to structure conversion, and vice versa. It also recognizes CAS Registry number. Various improvements have been made recentl…
Chemical Entity extraction using the chemicalize.org-technology
Jun 4, 2009 - PresentationWe will present an early implementation of the chemicalize.org-technology (chemical entity recognition + name2struct) into a tool that is used for text mining purposes.
This will enable u…
Extract Chemical Information from Patents Using Chemicalize and D2S (Document to Structure)
Oct 31, 2012 - PresentationChemAxon hosts a free web service called Chemicalize.org to help users extract chemical information from webpages and documents. It is powered by ChemAxon’s Naming technology that conve…
Naming and Document indexing
Jun 26, 2013 - PresentationChemAxon continues to build on it’s mature English name and chemical structure conversion engine in the latest release. We review the conversion paths (Structure to Name, Name to S…
From chaos to order: Collecting chemical and biologic information in the documentation space
Aug 19, 2012 - PresentationMuch chemical information is buried deeply and scattered in a chaos within documents. The structures may take different forms, as names (IUPAC, common, generic ¼), strings (SMILES, InChI…
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